Ciruvis: a web-based tool for rule networks and interaction detection using rule-based classifiers. - Susanne Bornelöv; Simon Marillet; Jan Komorowski (BMC Bioinform., 2014)

Predicting binding poses and affinities for protein - ligand complexes in the 2015 D3R Grand Challenge using a physical model with a statistical parameter estimation. - Sergei Grudinin; Maria Kadukova; Andreas Eisenbarth; Simon Marillet; Frédéric Cazals (J. Comput. Aided Mol. Des., 2016)

Modeling the antibody response: from the structure of immunoglobulin - antigen complexes to the clonal complexity of heavy chain repertoires. (Modélisation de la réponse des anticorps: de la structure des complexes immunoglobuline - antigène à la complexité clonale des répertoires de chaines lourdes d'immunoglobulines). - Simon Marillet (2016)