SNP-VISTA: An interactive SNP visualization tool. - Nameeta Y. Shah; Michael V. Teplitsky; Simon Minovitsky; Len A. Pennacchio; Philip Hugenholtz; Bernd Hamann; Inna Dubchak (BMC Bioinform., 2005)

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. - Shengyin Gu; Iain Anderson; Victor Kunin; Michael J. Cipriano; Simon Minovitsky; Gunther H. Weber; Nina Amenta; Bernd Hamann; Inna Dubchak (Bioinform., 2007)

Multiple whole genome alignments and novel biomedical applications at the VISTA portal. - Michael Brudno; Alexander Poliakov; Simon Minovitsky; Igor Ratnere; Inna Dubchak (Nucleic Acids Res., 2007)

RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. - Alexei E. Kazakov; Michael J. Cipriano; Pavel S. Novichkov; Simon Minovitsky; Dmitry V. Vinogradov; Adam P. Arkin; Andrey A. Mironov; Mikhail S. Gelfand; Inna Dubchak (Nucleic Acids Res., 2007)

VISTA Enhancer Browser - a database of tissue-specific human enhancers. - Axel Visel; Simon Minovitsky; Inna Dubchak; Len A. Pennacchio (Nucleic Acids Res., 2007)

VISTA Region Viewer (RViewer) - a computational system for prioritizing genomic intervals for biomedical studies. - Igor Lukashin; Pavel S. Novichkov; Dario Boffelli; Alex R. Paciorkowski; Simon Minovitsky; Song Yang; Inna Dubchak (Bioinform., 2011)

The Genome Portal of the Department of Energy Joint Genome Institute. - Igor V. Grigoriev; Henrik Nordberg; Igor Shabalov; Andrea Aerts; Mike Cantor; David M. Goodstein; Alan Kuo; Simon Minovitsky; Roman Nikitin; Robin A. Ohm; Robert Otillar; Alexander Poliakov; et al. (Nucleic Acids Res., 2012)

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data. - Inna Dubchak; Matthew Munoz; Alexander Poliakov; Nathan Salomonis; Simon Minovitsky; Rolf Bodmer; Alexander C. Zambon (Bioinform., 2013)