The Pfam protein families database. - Alex Bateman; Lachlan James M. Coin; Richard Durbin; Robert D. Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L. L. Sonnhammer; David J. Studholme; Corin Yeats; et al. (Nucleic Acids Res., 2004)

Rfam: annotating non-coding RNAs in complete genomes. - Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R. Eddy; Alex Bateman (Nucleic Acids Res., 2005)

Pfam: clans, web tools and services. - Robert D. Finn; Jaina Mistry; Benjamin Schuster-Böckler; Sam Griffiths-Jones; Volker Hollich; Timo Lassmann; Simon Moxon; Mhairi Marshall; Ajay Khanna; Richard Durbin; Sean R. Eddy; Erik L. L. Sonnhammer; et al. (Nucleic Acids Res., 2006)

Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana. - Anthony J. Bagnall; Simon Moxon; David J. Studholme; Vincent Moulton (BIOCOMP, 2008)

A scoring matrix approach to detecting miRNA target sites. - Simon Moxon; Vincent Moulton; Jan T. Kim (Algorithms Mol. Biol., 2008)

A toolkit for analysing large-scale plant small RNA datasets. - Simon Moxon; Frank Schwach; Tamas Dalmay; Daniel MacLean; David J. Studholme; Vincent Moulton (Bioinform., 2008)

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. - Matthew B. Stocks; Simon Moxon; Daniel Mapleson; Hugh C. Woolfenden; Irina Mohorianu; Leighton Folkes; Frank Schwach; Tamas Dalmay; Vincent Moulton (Bioinform., 2012)

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets. - Claudia Paicu; Irina Mohorianu; Matthew B. Stocks; Ping Xu; Aurore Coince; Martina Billmeier; Tamas Dalmay; Vincent Moulton; Simon Moxon (Bioinform., 2017)

The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs. - Matthew B. Stocks; Irina Mohorianu; Matthew Beckers; Claudia Paicu; Simon Moxon; Joshua Thody; Tamas Dalmay; Vincent Moulton (Bioinform., 2018)

FilTar: using RNA-Seq data to improve microRNA target prediction accuracy in animals. - Thomas Bradley; Simon Moxon (Bioinform., 2020)