Rat Genome Database (RGD): mapping disease onto the genome. - Simon N. Twigger; Jian Lu; Mary Shimoyama; Dan Chen; Dean Pasko; Hanping Long; Jessica Ginster; Chin-Fu Chen; Rajni Nigam; Anne E. Kwitek; Janan T. Eppig; Lois Maltais; et al. (Nucleic Acids Res., 2002)

ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels. - Brian D. Halligan; Victor Ruotti; Weihong Jin; Scott Laffoon; Simon N. Twigger; Edward A. Dratz (Nucleic Acids Res., 2004)

The Rat Genome Database (RGD): developments towards a phenome database. - Norberto de la Cruz; Susan Bromberg; Dean Pasko; Mary Shimoyama; Simon N. Twigger; Jiali Chen; Chin-Fu Chen; Chunyu Fan; Cindy Foote; Gopal R. Gopinath; Glenn Harris; Aubrey Hughes; et al. (Nucleic Acids Res., 2005)

DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy. - Brian D. Halligan; Victor Ruotti; Simon N. Twigger; Andrew S. Greene (Nucleic Acids Res., 2005)

The Rat Genome Database, update 2007 - Easing the path from disease to data and back again. - Simon N. Twigger; Mary Shimoyama; Susan Bromberg; Anne E. Kwitek; Howard J. Jacob (Nucleic Acids Res., 2007)

Using the NCBO Web Services for Concept Recognition and Ontology Annotation of Expression Datasets. - Simon N. Twigger; Joey Geiger; Jennifer R. Smith (SWAT4LS, 2009)

The Rat Genome Database 2009: variation, ontologies and pathways. - Melinda R. Dwinell; Elizabeth A. Worthey; Mary Shimoyama; Burcu Bakir-Gungor; Jeffrey DePons; Stanley J. F. Laulederkind; Timothy Lowry; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Alexander Stoddard; Simon N. Twigger; et al. (Nucleic Acids Res., 2009)

The Rat Genome Database Curators: Who, What, Where, Why. - Mary Shimoyama; G. Thomas Hayman; Stanley J. F. Laulederkind; Rajni Nigam; Timothy Lowry; Victoria Petri; Jennifer R. Smith; Shur-Jen Wang; Diane H. Munzenmaier; Melinda R. Dwinell; Simon N. Twigger; Howard J. Jacob (PLoS Comput. Biol., 2009)

The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data. - Stanley J. F. Laulederkind; Mary Shimoyama; G. Thomas Hayman; Timothy Lowry; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Shur-Jen Wang; Jeff de Pons; George Kowalski; Weisong Liu; Wes Rood; et al. (Database J. Biol. Databases Curation, 2011)

The Rat Genome Database Pathway Portal. - Victoria Petri; Mary Shimoyama; G. Thomas Hayman; Jennifer R. Smith; Marek Tutaj; Jeff de Pons; Melinda R. Dwinell; Diane H. Munzenmaier; Simon N. Twigger; Howard J. Jacob (Database J. Biol. Databases Curation, 2011)