Integrated databanks access and sequence/structure analysis services at the PBIL. - Guy Perrière; Christophe Combet; Simon Penel; Christophe Blanchet; Jean Thioulouse; Christophe Geourjon; Julien Grassot; Céline Charavay; Manolo Gouy; Laurent Duret; Gilbert Deléage (Nucleic Acids Res., 2003)

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. - Jean-François Dufayard; Laurent Duret; Simon Penel; Manolo Gouy; François Rechenmann; Guy Perrière (Bioinform., 2005)

Polymorphix: a sequence polymorphism database. - Eric Bazin; Laurent Duret; Simon Penel; Nicolas Galtier (Nucleic Acids Res., 2005)

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. - Paul J. Kersey; Lawrence Bower; Lorna Morris; Alan Horne; Robert Petryszak; Carola Kanz; Alexander Kanapin; Ujjwal Das; Karine Michoud; Isabelle Phan; Alexandre Gattiker; Tamara Kulikova; et al. (Nucleic Acids Res., 2005)

Databases of homologous gene families for comparative genomics. - Simon Penel; Anne-Muriel Arigon; Jean-François Dufayard; Anne-Sophie Sertier; Vincent Daubin; Laurent Duret; Manolo Gouy; Guy Perrière (BMC Bioinform., 2009)

Ultra-fast sequence clustering from similarity networks with SiLiX. - Vincent Miele; Simon Penel; Laurent Duret (BMC Bioinform., 2011)

PhEVER: a database for the global exploration of virus-host evolutionary relationships. - Leonor Palmeira; Simon Penel; Vincent Lotteau; Chantal Rabourdin-Combe; Christian Gautier (Nucleic Acids Res., 2011)

High-quality sequence clustering guided by network topology and multiple alignment likelihood. - Vincent Miele; Simon Penel; Vincent Daubin; Franck Picard; Daniel Kahn; Laurent Duret (Bioinform., 2012)

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. - Nicolas Comte; Benoit Morel; Damir Hasic; Laurent Guéguen; Bastien Boussau; Vincent Daubin; Simon Penel; Céline Scornavacca; Manolo Gouy; Alexandros Stamatakis; Eric Tannier; David P. Parsons (Bioinform., 2020)

Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation. - Simon Penel; Hugo Menet; Théo Tricou; Vincent Daubin; Eric Tannier (Bioinform., 2022)