A reference implementation of the adaptive resolution scheme in ESPResSo. - Christoph Junghans; Simón Poblete (Comput. Phys. Commun., 2010)

Brief Comparison between Experimental and Computationally Generated Ensembles of RNA Dinucleotides. - Simón Poblete; Tomás Pérez-Acle (J. Chem. Inf. Model., 2020)

Unknotting RNA: A method to resolve computational artifacts. - Simón Poblete; Mikolaj Mlynarczyk; Marta Szachniuk (PLoS Comput. Biol., 2025)