Estimating Dataset Size Requirements for Classifying DNA Microarray Data. - Sayan Mukherjee 001; Pablo Tamayo; Simon Rogers; Ryan M. Rifkin; Anna Engle; Colin Campbell; Todd R. Golub; Jill P. Mesirov (J. Comput. Biol., 2003)

Disease Classification from Capillary Electrophoresis: Mass Spectrometry. - Simon Rogers; Mark A. Girolami; Ronald Krebs; Harald Mischak (ICAPR (1), 2005)

Hierarchic Bayesian models for kernel learning. - Mark A. Girolami; Simon Rogers (ICML, 2005)

A Bayesian regression approach to the inference of regulatory networks from gene expression data. - Simon Rogers; Mark A. Girolami (Bioinform., 2005)

The Latent Process Decomposition of cDNA Microarray Data Sets. - Simon Rogers; Mark A. Girolami; Colin Campbell; Rainer Breitling (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors. - Mark A. Girolami; Simon Rogers (Neural Comput., 2006)

Bayesian model-based inference of transcription factor activity. - Simon Rogers; Raya Khanin; Mark A. Girolami (BMC Bioinform., 2007)

Multi-class Semi-supervised Learning with the e-truncated Multinomial Probit Gaussian Process. - Simon Rogers; Mark A. Girolami (Gaussian Processes in Practice, 2007)

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. - Simon Rogers; Mark A. Girolami; Walter Kolch; Katrina M. Waters; Tao Liu 003; Brian Thrall; H. Steven Wiley (Bioinform., 2008)

Classification of Protein Interaction Sentences via Gaussian Processes. - Tamara Polajnar; Simon Rogers; Mark A. Girolami (PRIB, 2009)

Probabilistic assignment of formulas to mass peaks in metabolomics experiments. - Simon Rogers; Richard A. Scheltema; Mark A. Girolami; Rainer Breitling (Bioinform., 2009)

FingerCloud: uncertainty and autonomy handover incapacitive sensing. - Simon Rogers; John Williamson 001; Craig D. Stewart; Roderick Murray-Smith (CHI, 2010)

Infinite factorization of multiple non-parametric views. - Simon Rogers; Arto Klami; Janne Sinkkonen; Mark A. Girolami; Samuel Kaski (Mach. Learn., 2010)

Semi-parametric analysis of multi-rater data. - Simon Rogers; Mark A. Girolami; Tamara Polajnar (Stat. Comput., 2010)

A First Course in Machine Learning. - Simon Rogers; Mark A. Girolami (CRC Press, 2011)

AnglePose: robust, precise capacitive touch tracking via 3d orientation estimation. - Simon Rogers; John Williamson 001; Craig D. Stewart; Roderick Murray-Smith (CHI, 2011)

Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation. - Tamara Polajnar; Simon Rogers; Mark A. Girolami (Int. J. Data Min. Bioinform., 2011)

A user-specific machine learning approach for improving touch accuracy on mobile devices. - Daryl Weir; Simon Rogers; Roderick Murray-Smith; Markus Löchtefeld (UIST, 2012)

ODE parameter inference using adaptive gradient matching with Gaussian processes. - Frank Dondelinger; Dirk Husmeier; Simon Rogers; Maurizio Filippone (AISTATS, 2013)

User-specific touch models in a cross-device context. - Daniel Buschek; Simon Rogers; Roderick Murray-Smith (Mobile HCI, 2013)

Sparse selection of training data for touch correction systems. - Daryl Weir; Daniel Buschek; Simon Rogers (Mobile HCI, 2013)

Exploiting Query Logs and Field-Based Models to Address Term Mismatch in an HIV/AIDS FAQ Retrieval System. - Edwin Thuma; Simon Rogers; Iadh Ounis (NLDB, 2013)

Evaluating bad query abandonment in an iterative SMS-based FAQ retrieval system. - Edwin Thuma; Simon Rogers; Iadh Ounis (OAIR, 2013)

A Heuristic-Based Approach for Flattening Wrinkled Clothes. - Li Sun 005; Gerardo Aragon-Camarasa; W. Paul Cockshott; Simon Rogers; J. Paul Siebert (TAROS, 2013)

Investigating the Disagreement Between Clinicians' Ratings of Patients in ICUs. - Simon Rogers; Derek H. Sleeman; John Kinsella (IEEE J. Biomed. Health Informatics, 2013)

28 frames later: predicting screen touches from back-of-device grip changes. - Mohammad Faizuddin Mohd Noor; Andrew Ramsay; Stephen Hughes; Simon Rogers; John Williamson 001; Roderick Murray-Smith (CHI, 2014)

Uncertain text entry on mobile devices. - Daryl Weir; Henning Pohl; Simon Rogers; Keith Vertanen; Per Ola Kristensson (CHI, 2014)

Detecting Missing Content Queries in an SMS-Based HIV/AIDS FAQ Retrieval System. - Edwin Thuma; Simon Rogers; Iadh Ounis (ECIR, 2014)

MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach. - Rónán Daly; Simon Rogers; Joe Wandy; Andris Jankevics; Karl E. V. Burgess; Rainer Breitling (Bioinform., 2014)

Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations. - Tommi Suvitaival; Simon Rogers; Samuel Kaski (Bioinform., 2014)

Stronger findings from mass spectral data through multi-peak modeling. - Tommi Suvitaival; Simon Rogers; Samuel Kaski (BMC Bioinform., 2014)

Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening. - Li Sun 005; Gerardo Aragon-Camarasa; Simon Rogers; J. Paul Siebert (ICRA, 2015)

Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets. - Joe Wandy; Rónán Daly; Rainer Breitling; Simon Rogers (Bioinform., 2015)

Detecting Swipe Errors on Touchscreens using Grip Modulation. - Mohammad Faizuddin Mohd Noor; Simon Rogers; John Williamson 001 (CHI, 2016)

Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching. - Mu Niu; Simon Rogers; Maurizio Filippone; Dirk Husmeier (CIBB, 2016)

Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching. - Mu Niu; Simon Rogers; Maurizio Filippone; Dirk Husmeier (ICML, 2016)

Recognising the clothing categories from free-configuration using Gaussian-Process-based interactive perception. - Li Sun 005; Simon Rogers; Gerardo Aragon-Camarasa; J. Paul Siebert (ICRA, 2016)

Robot Vision Architecture for Autonomous Clothes Manipulation. - Li Sun 005; Gerardo Aragon-Camarasa; Simon Rogers; J. Paul Siebert (CoRR, 2016)

Pre-interaction identification by dynamic grip classification. - Mohammad Faizuddin Mohd Noor; Simon Rogers; John Williamson 001 (IMCOM, 2017)

Single-shot clothing category recognition in free-configurations with application to autonomous clothes sorting. - Li Sun 005; Gerardo Aragon-Camarasa; Simon Rogers; Rustam Stolkin; J. Paul Siebert (IROS, 2017)

PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data. - Yoann Gloaguen; Fraser R. Morton; Rónán Daly; Ross Gurden; Simon Rogers; Joe Wandy; David Wilson; Michael P. Barrett; Karl E. V. Burgess (Bioinform., 2017)

Autonomous Clothes Manipulation Using a Hierarchical Vision Architecture. - Li Sun 005; Gerardo Aragon-Camarasa; Simon Rogers; Jan Paul Siebert (IEEE Access, 2018)

ShinyKGode: an interactive application for ODE parameter inference using gradient matching. - Joe Wandy; Mu Niu; Diana Giurghita; Rónán Daly; Simon Rogers; Dirk Husmeier (Bioinform., 2018)

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry. - Joe Wandy; Yunfeng Zhu; Justin J. J. van der Hooft; Rónán Daly; Michael P. Barrett; Simon Rogers (Bioinform., 2018)

Statistical inference in mechanistic models: time warping for improved gradient matching. - Mu Niu; Benn Macdonald; Simon Rogers; Maurizio Filippone; Dirk Husmeier (Comput. Stat., 2018)

matchms - processing and similarity evaluation of mass spectrometry data. - Florian Huber; Stefan Verhoeven; Christiaan Meijer; Hanno Spreeuw; Efraín Castilla; Cunliang Geng; Justin J. J. van der Hooft; Simon Rogers; Adam Belloum; Faruk Diblen; Jurriaan H. Spaaks (J. Open Source Softw., 2020)

Predicting host taxonomic information from viral genomes: A comparison of feature representations. - Francesca Young; Simon Rogers; David L. Robertson (PLoS Comput. Biol., 2020)

Per-Host DDoS Mitigation by Direct-Control Reinforcement Learning. - Kyle A. Simpson; Simon Rogers; Dimitrios P. Pezaros (IEEE Trans. Netw. Serv. Manag., 2020)

Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification. - Eric Bach 002; Simon Rogers; John Williamson 001; Juho Rousu (Bioinform., 2021)

Forward and Inverse models in HCI: Physical simulation and deep learning for inferring 3D finger pose. - Roderick Murray-Smith; John H. Williamson 001; Andrew Ramsay; Francesco Tonolini; Simon Rogers; Antoine Loriette (CoRR, 2021)

Machine Learning Models Disclosure from Trusted Research Environments (TRE), Challenges and Opportunities. - Esma Mansouri-Benssassi; Simon Rogers; Jim Smith; Felix Ritchie; Emily R. Jefferson (CoRR, 2021)

R package for statistical inference in dynamical systems using kernel based gradient matching: KGode. - Mu Niu; Joe Wandy; Rónán Daly; Simon Rogers; Dirk Husmeier (Comput. Stat., 2021)

Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions. - Grímur Hjörleifsson Eldjárn; Andrew Ramsay; Justin J. J. van der Hooft; Katherine R. Duncan; Sylvia Soldatou; Juho Rousu; Rónán Daly; Joe Wandy; Simon Rogers (PLoS Comput. Biol., 2021)

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. - Florian Huber; Lars Ridder; Stefan Verhoeven; Jurriaan H. Spaaks; Faruk Diblen; Simon Rogers; Justin J. J. van der Hooft (PLoS Comput. Biol., 2021)

PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells. - Simon Rogers; Virgilio L. Lew (PLoS Comput. Biol., 2021)

Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits. - Simon Rogers; Virgilio L. Lew (PLoS Comput. Biol., 2021)

GRAIMATTER Green Paper: Recommendations for disclosure control of trained Machine Learning (ML) models from Trusted Research Environments (TREs). - Emily R. Jefferson; James Liley; Maeve Malone; Smarti Reel; Alba Crespi-Boixader; Xaroula Kerasidou; Francesco Tava; Andrew McCarthy; Richard Preen; Alberto Blanco-Justicia; Esma Mansouri-Benssassi; Josep Domingo-Ferrer; et al. (CoRR, 2022)

Safe machine learning model release from Trusted Research Environments: The AI-SDC package. - Jim Smith 002; Richard John Preen; Andrew McCarthy; Alba Crespi-Boixader; James Liley; Simon Rogers (CoRR, 2022)

ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics. - Joe Wandy; Vinny Davies; Ross McBride; Stefan Weidt; Simon Rogers; Rónán Daly (J. Open Source Softw., 2022)

Using topic modeling to detect cellular crosstalk in scRNA-seq. - Alexandrina Pancheva; Helen Wheadon; Simon Rogers; Thomas D. Otto (PLoS Comput. Biol., 2022)

Publisher Correction: Development and assessment of a machine learning tool for predicting emergency admission in Scotland. - James Liley; Gergo Bohner; Samuel R. Emerson; Bilal A. Mateen; Katie Borland; David Carr; Scott Heald; Samuel D. Oduro; Jill Ireland; Keith Moffat; Rachel Porteous; Stephen Riddell; et al. (npj Digit. Medicine, 2024)

Development and assessment of a machine learning tool for predicting emergency admission in Scotland. - James Liley; Gergo Bohner; Samuel R. Emerson; Bilal A. Mateen; Katie Borland; David Carr; Scott Heald; Samuel D. Oduro; Jill Ireland; Keith Moffat; Rachel Porteous; Stephen Riddell; et al. (npj Digit. Medicine, 2024)