Functional and genetic analysis of the colon cancer network. - Frank Emmert-Streib; Ricardo de Matos Simoes; Galina V. Glazko; Simon S. McDade; Benjamin Haibe-Kains; Andreas Holzinger; Matthias Dehmer; Frederick Campbell (BMC Bioinform., 2014)

SynLeGG: analysis and visualization of multiomics data for discovery of cancer 'Achilles Heels' and gene function relationships. - Mark Wappett; Adam Harris; Alexander L. R. Lubbock; Ian Lobb; Simon S. McDade; Ian M. Overton (Nucleic Acids Res., 2021)

classifieR a flexible interactive cloud-application for functional annotation of cancer transcriptomes. - Gerard P. Quinn; Tamas Sessler; Baharak Ahmaderaghi; Shauna Lambe; Harper VanSteenhouse; Mark Lawler; Mark Wappett; Bruce Seligmann; Daniel B. Longley; Simon S. McDade (BMC Bioinform., 2022)

ClassifieR 2.0: expanding interactive gene expression-based stratification to prostate and high-grade serous ovarian cancer. - Aideen McCabe; Gerard P. Quinn; Suneil Jain; Micheál Ó Dálaigh; Kellie Dean; Ross G. Murphy; Simon S. McDade (BMC Bioinform., 2024)