Limit Theorems for Combinatorial Structures via Discrete Process Approximations. - Richard Arratia; Simon Tavaré (Random Struct. Algorithms, 1992)

A Rate for the Erdös-Turán Law. - Andrew D. Barbour; Simon Tavaré (Comb. Probab. Comput., 1994)

The Poisson-Dirichlet Distribution And The Scale-Invariant Poisson Process. - Richard Arratia; Andrew D. Barbour; Simon Tavaré (Comb. Probab. Comput., 1999)

The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project. - Sophie Schbath; Nathalie Bossard; Simon Tavaré (J. Comput. Biol., 2000)

A Model for Phylogenetic Inference Using Structural and Chemical Covariates. - Simon Tavaré; Dean C. Adams; Olivier Fedrigo; Gavin J. P. Naylor (Pacific Symposium on Biocomputing, 2001)

BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. - John C. Marioni; Natalie P. Thorne; Simon Tavaré (Bioinform., 2006)

A Tale of Three Couplings: Poisson-Dirichlet and GEM Approximations for Random Permutations. - Richard Arratia; Andrew D. Barbour; Simon Tavaré (Comb. Probab. Comput., 2006)

beadarray: R classes and methods for Illumina bead-based data. - Mark J. Dunning; Mike L. Smith; Matthew E. Ritchie; Simon Tavaré (Bioinform., 2007)

Using expression arrays for copy number detection: an example from E. coli. - Dmitriy Skvortsov; Diana Abdueva; Michael E. Stitzer; Steven E. Finkel; Simon Tavaré (BMC Bioinform., 2007)

The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns. - Pierre Nicolas; Kyoung-Mee Kim; Darryl Shibata; Simon Tavaré (PLoS Comput. Biol., 2007)

Statistical issues in the analysis of Illumina data. - Mark J. Dunning; Nuno L. Barbosa-Morais; Andy G. Lynch; Simon Tavaré; Matthew E. Ritchie (BMC Bioinform., 2008)

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. - Matthew E. Ritchie; Benilton S. Carvalho; Kurt N. Hetrick; Simon Tavaré; Rafael A. Irizarry (Bioinform., 2009)

Strategies for analyzing highly enriched IP-chip datasets. - Simon R. V. Knott; Christopher J. Viggiani; Oscar M. Aparicio; Simon Tavaré (BMC Bioinform., 2009)

BayesPeak: Bayesian analysis of ChIP-seq data. - Christiana Spyrou; Rory Stark; Andy G. Lynch; Simon Tavaré (BMC Bioinform., 2009)

Finding Behavioral Motifs in Fly Trajectories. - Dhruv Grover; Simon Tavaré (Commun. Inf. Syst., 2009)

Integrating Approximate Bayesian Computation with Complex Agent-Based Models for Cancer Research. - Andrea Sottoriva; Simon Tavaré (COMPSTAT, 2010)

CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data. - Sergii Ivakhno; Tom Royce; Anthony J. Cox; Dirk J. Evers; R. Keira Cheetham; Simon Tavaré (Bioinform., 2010)

CNAnova: a new approach for finding recurrent copy number abnormalities in cancer SNP microarray data. - Sergii Ivakhno; Simon Tavaré (Bioinform., 2010)

Data analysis issues for allele-specific expression using Illumina's GoldenGate assay. - Matthew E. Ritchie; Matthew S. Forrest; Antigone S. Dimas; Caroline Daelemans; Emmanouil T. Dermitzakis; Panagiotis Deloukas; Simon Tavaré (BMC Bioinform., 2010)

Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data. - Mike L. Smith; Mark J. Dunning; Simon Tavaré; Andy G. Lynch (BMC Bioinform., 2010)

BayesPeak - an R package for analysing ChIP-seq data. - Jonathan M. Cairns; Christiana Spyrou; Rory Stark; Mike L. Smith; Andy G. Lynch; Simon Tavaré (Bioinform., 2011)

Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors. - Andrea Sottoriva; Louis Vermeulen; Simon Tavaré (PLoS Comput. Biol., 2011)

Automated quantification of the schooling behaviour of sticklebacks. - Reza Ardekani; Anna K. Greenwood; Catherine L. Peichel; Simon Tavaré (EURASIP J. Image Video Process., 2013)

Normalization of metabolomics data with applications to correlation maps. - Alexandra Jauhiainen; Basetti Madhu; Masako Narita; Masashi Narita; John Griffiths; Simon Tavaré (Bioinform., 2014)

Flexible analysis of RNA-seq data using mixed effects models. - Ernest Turro; William J. Astle; Simon Tavaré (Bioinform., 2014)

HDTD: analyzing multi-tissue gene expression data. - Anestis Touloumis; John C. Marioni; Simon Tavaré (Bioinform., 2016)

A note on the Screaming Toes game. - Simon Tavaré (J. Appl. Probab., 2022)

Gradient Estimation for Binary Latent Variables via Gradient Variance Clipping. - Russell Z. Kunes; Mingzhang Yin; Max Land; Doron Haviv; Dana Pe'er; Simon Tavaré (AAAI, 2023)

CINner: Modeling and simulation of chromosomal instability in cancer at single-cell resolution. - Khanh N. Dinh; Ignacio Vázquez-García; Andrew Chan; Rhea Malhotra; Adam Weiner; Andrew W. McPherson; Simon Tavaré (PLoS Comput. Biol., 2025)