Modeling and Simulation of Molecular Biology Systems Using Petri Nets: Modeling Goals of Various Approaches. - Simon V. Hardy; Pierre N. Robillard (J. Bioinform. Comput. Biol., 2004)

Visualization of the simulation data of biochemical network models: a painted Petri net approach. - Simon V. Hardy; Pierre N. Robillard (SCSC, 2007)

Petri net-based method for the analysis of the dynamics of signal propagation in signaling pathways. - Simon V. Hardy; Pierre N. Robillard (Bioinform., 2008)

Analysis of the Signal Transduction Dynamics Regulating mTOR with Mathematical Modeling, Petri Nets and Dynamic Graphs. - Simon V. Hardy; Mathieu Pagé Fortin (PNSE @ Petri Nets, 2016)

A Hybrid Petri Net Model of the Akt-Wnt-mTOR-p70S6K Signalling Network in Neurons. - Mathieu Pagé Fortin; Simon V. Hardy (Fundam. Informaticae, 2018)

An algorithm for the transformation of the Petri net models of biological signaling networks into influence graphs. - Simon Gamache-Poirier; Alexia Souvane; William Leclerc; Catherine Villeneuve; Simon V. Hardy (Biosyst., 2025)