Reproducible evaluation of classification methods in Alzheimer's disease: framework and application to MRI and PET data. - Jorge Samper-González; Ninon Burgos; Simona Bottani; Sabrina Fontanella; Pascal Lu; Arnaud Marcoux; Alexandre Routier; Jérémy Guillon; Michael Bacci; Junhao Wen 002; Anne Bertrand; Hugo Bertin; et al. (CoRR, 2018)

Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimers disease. - Junhao Wen 002; Jorge Samper-González; Simona Bottani; Alexandre Routier; Ninon Burgos; Thomas Jacquemont; Sabrina Fontanella; Stanley Durrleman; Stéphane Epelbaum; Anne Bertrand; Olivier Colliot (CoRR, 2018)

An Automated Pipeline for the Analysis of PET Data on the Cortical Surface. - Arnaud Marcoux; Ninon Burgos; Anne Bertrand; Marc Teichmann; Alexandre Routier; Junhao Wen 002; Jorge Samper-González; Simona Bottani; Stanley Durrleman; Marie Odile Habert; Olivier Colliot (Frontiers Neuroinformatics, 2018)

Reproducible evaluation of classification methods in Alzheimer's disease: Framework and application to MRI and PET data. - Jorge Samper-González; Ninon Burgos; Simona Bottani; Sabrina Fontanella; Pascal Lu; Arnaud Marcoux; Alexandre Routier; Jérémy Guillon; Michael Bacci; Junhao Wen 002; Anne Bertrand; Hugo Bertin; et al. (NeuroImage, 2018)

Reproducible evaluation of methods for predicting progression to Alzheimer's disease from clinical and neuroimaging data. - Jorge Samper-González; Ninon Burgos; Simona Bottani; Marie Odile Habert; Theodoros Evgeniou; Stéphane Epelbaum; Olivier Colliot (Image Processing, 2019)

Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation. - Junhao Wen 002; Elina Thibeau-Sutre; Jorge Samper-González; Alexandre Routier; Simona Bottani; Stanley Durrleman; Ninon Burgos; Olivier Colliot (CoRR, 2019)

Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation. - Junhao Wen 002; Elina Thibeau-Sutre; Mauricio Diaz-Melo; Jorge Samper-González; Alexandre Routier; Simona Bottani; Didier Dormont; Stanley Durrleman; Ninon Burgos; Olivier Colliot (Medical Image Anal., 2020)

Deep learning for brain disorders: from data processing to disease treatment. - Ninon Burgos; Simona Bottani; Johann Faouzi; Elina Thibeau-Sutre; Olivier Colliot (Briefings Bioinform., 2021)

Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies. - Alexandre Routier; Ninon Burgos; Mauricio Diaz-Melo; Michael Bacci; Simona Bottani; Omar El-Rifai; Sabrina Fontanella; Pietro Gori; Jérémy Guillon; Alexis Guyot; Ravi Hassanaly; Thomas Jacquemont; et al. (Frontiers Neuroinformatics, 2021)

Predicting the progression of mild cognitive impairment using machine learning: A systematic, quantitative and critical review. - Manon Ansart; Stéphane Epelbaum; Giulia Bassignana; Alexandre Bône; Simona Bottani; Tiziana Cattai; Raphaël Couronné; Johann Faouzi; Igor Koval; Maxime Louis; Elina Thibeau-Sutre; Junhao Wen 002; et al. (Medical Image Anal., 2021)

Reproducible Evaluation of Diffusion MRI Features for Automatic Classification of Patients with Alzheimer's Disease. - Junhao Wen 002; Jorge Samper-González; Simona Bottani; Alexandre Routier; Ninon Burgos; Thomas Jacquemont; Sabrina Fontanella; Stanley Durrleman; Stéphane Epelbaum; Anne Bertrand; Olivier Colliot (Neuroinformatics, 2021)

Gaussian Graphical Model Exploration and Selection in High Dimension Low Sample Size Setting. - Thomas Lartigue; Simona Bottani; Stephanie Baron; Olivier Colliot; Stanley Durrleman; Stéphanie Allassonnière (IEEE Trans. Pattern Anal. Mach. Intell., 2021)

Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models. - Simona Bottani; Elina Thibeau-Sutre; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (Image Processing, 2022)

Automatic quality control of brain T1-weighted magnetic resonance images for a clinical data warehouse. - Simona Bottani; Ninon Burgos; Aurélien Maire; Adam Wild; Sebastian Ströer; Didier Dormont; Olivier Colliot (Medical Image Anal., 2022)

Machine learning for neuroimaging using a very large scale clinical datawarehouse. (Apprentissage automatique pour la neuro-imagerie à l'aide d'un entrepôt de données cliniques à très grande échelle). - Simona Bottani (2022)

Simulation based evaluation framework for deep learning unsupervised anomaly detection on brain FDG-PET. - Ravi Hassanaly; Simona Bottani; Benoît Sauty; Olivier Colliot; Ninon Burgos (Image Processing, 2023)

Transfer learning from synthetic to routine clinical data for motion artefact detection in brain T1-weighted MRI. - Sophie Loizillon; Simona Bottani; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (Image Processing, 2023)

Evaluation of MRI-based machine learning approaches for computer-aided diagnosis of dementia in a clinical data warehouse. - Simona Bottani; Ninon Burgos; Aurélien Maire; Dario Saracino; Sebastian Ströer; Didier Dormont; Olivier Colliot (Medical Image Anal., 2023)

Automated MRI Quality Assessment of Brain T1-weighted MRI in Clinical Data Warehouses: A Transfer Learning Approach Relying on Artefact Simulation. - Sophie Loizillon; Simona Bottani; Stéphane Mabille; Yannick Jacob; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (CoRR, 2024)

Automatic motion artefact detection in brain T1-weighted magnetic resonance images from a clinical data warehouse using synthetic data. - Sophie Loizillon; Simona Bottani; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (Medical Image Anal., 2024)

Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI. - Simona Bottani; Elina Thibeau-Sutre; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (BMC Medical Imaging, 2024)

Automatic quality control of brain 3D FLAIR MRIs for a clinical data warehouse. - Sophie Loizillon; Simona Bottani; Aurélien Maire; Sebastian Ströer; Lydia Chougar; Didier Dormont; Olivier Colliot; Ninon Burgos (Medical Image Anal., 2025)