Discovering Representative Models in Large Time Series Databases. - Simona E. Rombo; Giorgio Terracina (FQAS, 2004)

Riduzione del traffico nei sistemi P2P: un approccio semantico. - Francesco Buccafurri; Gianluca Lax; Simona E. Rombo (SEBD, 2004)

Derivazione efficiente di pattern strutturati frequenti da database di natura biologica. - Pasquale Grimaldi; Simona E. Rombo; Giorgio Terracina; Luigi Palopoli 001 (SEBD, 2004)

Flexible Pattern Discovery with (Extended) Disjunctive Logic Programming. - Luigi Palopoli 001; Simona E. Rombo; Giorgio Terracina (ISMIS, 2005)

JSSPrediction: a Framework to Predict Protein Secondary Structures Using Integration. - Luigi Palopoli 001; Simona E. Rombo; Giorgio Terracina; Giuseppe Tradigo; Pierangelo Veltri (CBMS, 2006)

GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (BIBM, 2007)

Protein Data Condensation for Effective Quaternary Structure Classification. - Fabrizio Angiulli; Valeria Fionda; Simona E. Rombo (IDEAL, 2007)

PINCoC : A Co-clustering Based Approach to Analyze Protein-Protein Interaction Networks. - Clara Pizzuti; Simona E. Rombo (IDEAL, 2007)

Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (BIRD, 2008)

Multi-functional Protein Clustering in PPI Networks . - Clara Pizzuti; Simona E. Rombo (BIRD, 2008)

Singling out functional similarities in graph databases. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (SEBD, 2008)

Discovering meaningful protein-protein interaction modules by a co-clustering based approach. - Clara Pizzuti; Simona E. Rombo (SEBD, 2008)

Motif patterns in 2D. - Alberto Apostolico; Laxmi Parida; Simona E. Rombo (Theor. Comput. Sci., 2008)

Experimental Evaluation of Protein Secondary Structure Predictors. - Luca Miceli; Luigi Palopoli 001; Simona E. Rombo; Giorgio Terracina; Giuseppe Tradigo; Pierangelo Veltri (ICCS (1), 2009)

Extracting similar sub-graphs across PPI networks. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (ISCIS, 2009)

A technique to search for functional similarities in protein-protein interaction networks. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (Int. J. Data Min. Bioinform., 2009)

Improving protein secondary structure predictions by prediction fusion. - Luigi Palopoli 001; Simona E. Rombo; Giorgio Terracina; Giuseppe Tradigo; Pierangelo Veltri (Inf. Fusion, 2009)

Optimal extraction of motif patterns in 2D. - Simona E. Rombo (Inf. Process. Lett., 2009)

A Summary of Genomic Databases: Overview and Discussion. - Erika De Francesco; Giuliana Di Santo; Luigi Palopoli 001; Simona E. Rombo (Biomedical Data and Applications, 2009)

IP6K Gene Discovery in Plant mtDNA. - Fabio Fassetti; Ofelia Leone; Luigi Palopoli 001; Simona E. Rombo; Adolfo Saiardi (CIBB, 2010)

"Master-Slave" Biological Network Alignment. - Nicola Ferraro; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (ISBRA, 2010)

Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract). - Nicola Ferraro; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (SEBD, 2010)

New Trends in Graph Mining: Structural and Node-Colored Network Motifs. - Francesco Bruno; Luigi Palopoli 001; Simona E. Rombo (Int. J. Knowl. Discov. Bioinform., 2010)

Image Compression by 2D Motif Basis. - Alessia Amelio; Alberto Apostolico; Simona E. Rombo (DCC, 2011)

Asymmetric Comparison and Querying of Biological Networks. - Nicola Ferraro; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Complex Detection in Protein-Protein Interaction Networks: A Compact Overview for Researchers and Practitioners. - Clara Pizzuti; Simona E. Rombo; Elena Marchiori (EvoBIO, 2012)

Experimental evaluation of topological-based fitness functions to detect complexes in PPI networks. - Clara Pizzuti; Simona E. Rombo (GECCO, 2012)

Approximate matching over biological RDF graphs. - Roberto De Virgilio; Simona E. Rombo (SAC, 2012)

Characterization and Extraction of Irredundant Tandem Motifs. - Laxmi Parida; Cinzia Pizzi; Simona E. Rombo (SPIRE, 2012)

A Coclustering Approach for Mining Large Protein-Protein Interaction Networks. - Clara Pizzuti; Simona E. Rombo (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Extracting string motif bases for quorum higher than two. - Simona E. Rombo (Theor. Comput. Sci., 2012)

Image Classification Based on 2D Feature Motifs. - Angelo Furfaro; Maria Carmela Groccia; Simona E. Rombo (FQAS, 2013)

Restricted Neighborhood Search Clustering Revisited: An Evolutionary Computation Perspective. - Clara Pizzuti; Simona E. Rombo (PRIB, 2013)

Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. - Laxmi Parida; Cinzia Pizzi; Simona E. Rombo (WABI, 2014)

Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies. - Raffaele Giancarlo; Simona E. Rombo; Filippo Utro (Briefings Bioinform., 2014)

Algorithms and tools for protein-protein interaction networks clustering, with a special focus on population-based stochastic methods. - Clara Pizzuti; Simona E. Rombo (Bioinform., 2014)

An evolutionary restricted neighborhood search clustering approach for PPI networks. - Clara Pizzuti; Simona E. Rombo (Neurocomputing, 2014)

Irredundant tandem motifs. - Laxmi Parida; Cinzia Pizzi; Simona E. Rombo (Theor. Comput. Sci., 2014)

Searching for repetitions in biological networks: methods, resources and tools. - Simona Panni; Simona E. Rombo (Briefings Bioinform., 2015)

Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning. - Raffaele Giancarlo; Simona E. Rombo; Filippo Utro (Bioinform., 2015)

Discovering New Proteins in Plant Mitochondria by RNA Editing Simulation. - Fabio Fassetti; Claudia Giallombardo; Ofelia Leone; Luigi Palopoli 001; Simona E. Rombo; Adolfo Saiardi (BIOINFORMATICS, 2016)

Discovering discriminative graph patterns from gene expression data. - Fabio Fassetti; Simona E. Rombo; Cristina Serrao (SAC, 2016)

2D Motif Basis Applied to the Classification of Digital Images. - Angelo Furfaro; Maria Carmela Groccia; Simona E. Rombo (Comput. J., 2017)

Automatic simulation of RNA editing in plants for the identification of novel putative Open Reading Frames. - Fabio Fassetti; Claudia Giallombardo; Ofelia Leone; Luigi Palopoli 001; Simona E. Rombo; Pierluigi Ruffolo; Adolfo Saiardi (PeerJ Prepr., 2017)

Foreword: Algorithms, Strings and Theoretical Approaches in the Big Data Era - Special Issue in Honor of the 60th Birthday of Professor Raffaele Giancarlo. - Simona E. Rombo; Filippo Utro (Theor. Comput. Sci., 2017)

Discriminative Pattern Discovery on Biological Networks - Fabio Fassetti; Simona E. Rombo; Cristina Serrao (Springer, 2017)

Contributions from ADBIS 2018 Workshops. - Udo Bub; Ajantha Dahanayake; Jérôme Darmont; Claudia Diamantini; Fabio Fassetti; Eduardo Fermé; Nadia Kabachi; Ilaria Matteucci; Bálint Molnár; Sham Navathe; Ermelinda Oro; Marinella Petrocchi; et al. (ADBIS (Short Papers and Workshops), 2018)

An Integrative Framework for the Construction of Big Functional Networks. - Claudia Giallombardo; Salvatore Morfea; Simona E. Rombo (BIBM, 2018)

Efficient Classification of Digital Images based on Pattern-features. - Angelo Furfaro; Simona E. Rombo (PhyCS, 2018)

In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes. - Raffaele Giancarlo; Simona E. Rombo; Filippo Utro (Bioinform., 2018)

Efficient Algorithms for Sequence Analysis with Entropic Profiles. - Cinzia Pizzi; Mattia Ornamenti; Simone Spangaro; Simona E. Rombo; Laxmi Parida (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Customer recommendation based on profile matching and customized campaigns in on-line social networks. - Mariella Bonomo; Gaspare Ciaccio; Andrea De Salve; Simona E. Rombo (ASONAM, 2019)

FEDRO: a software tool for the automatic discovery of candidate ORFs in plants with c →u RNA editing. - Fabio Fassetti; Claudia Giallombardo; Ofelia Leone; Luigi Palopoli 001; Simona E. Rombo; Adolfo Saiardi (BMC Bioinform., 2019)

Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics. - Umberto Ferraro Petrillo; Mara Sorella; Giuseppe Cattaneo; Raffaele Giancarlo; Simona E. Rombo (BMC Bioinform., 2019)

A Semantic Approach for User-Brand Targeting in On-Line Social Networks. - Mariella Bonomo; Gaspare Ciaccio; Andrea De Salve; Simona E. Rombo (CoRR, 2019)

DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes. - Raffaele Giancarlo; Simona E. Rombo; Filippo Utro (Theor. Comput. Sci., 2019)

Network Centralities and Node Ranking. - Raffaele Giancarlo; Daniele Greco; Francesco Landolina; Simona E. Rombo (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Algorithms for Graph and Network Analysis: Graph Alignment. - Luigi Palopoli 001; Simona E. Rombo (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Algorithms for Graph and Network Analysis: Clustering and Search of Motifs in Graphs. - Clara Pizzuti; Simona E. Rombo (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Prediction of lncRNA-Disease Associations from Tripartite Graphs. - Mariella Bonomo; Armando La Placa; Simona E. Rombo (Poly/DMAH@VLDB, 2020)

A Big Data Approach for Sequences Indexing on the Cloud via Burrows Wheeler Transform. - Mario Randazzo; Simona E. Rombo (AAI4H@ECAI, 2020)

Identifying the k Best Targets for an Advertisement Campaign via Online Social Networks. - Mariella Bonomo; Armando La Placa; Simona E. Rombo (KDIR, 2020)

Integrative bioinformatics and omics data source interoperability in the next-generation sequencing era - Editorial. - Simona E. Rombo; Domenico Ursino (Briefings Bioinform., 2021)

Burrows Wheeler Transform on a Large Scale: Algorithms Implemented in Apache Spark. - Ylenia Galluzzo; Raffaele Giancarlo; Mario Randazzo; Simona E. Rombo (CoRR, 2021)

A Collaborative Filtering Approach for Drug Repurposing. - Simone Contini; Simona E. Rombo (ADBIS (Short Papers), 2022)

Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis. - Mariella Bonomo; Raffaele Giancarlo; Daniele Greco; Simona E. Rombo (Briefings Bioinform., 2022)

DIAMIN: a software library for the distributed analysis of large-scale molecular interaction networks. - Lorenzo Di Rocco; Umberto Ferraro Petrillo; Simona E. Rombo (BMC Bioinform., 2022)

Databases and Information Systems: Contributions from ADBIS 2023 Workshops and Doctoral Consortium. - Adam Przybylek; Aleksandra Karpus; Allel Hadjali; Anton Dignös; Carmem S. Hara; Danae Pla Karidi; Ester Zumpano; Fabio Persia; Genoveva Vargas-Solar; George Papastefanatos; Giancarlo Sperlì; Giorgos Giannopoulos; et al. (ADBIS (Short Papers), 2023)

Prediction of User-Brand Associations Based on Sentiment Analysis. - Mariella Bonomo; Simona E. Rombo; Filippo Rotolo (EDBT/ICDT Workshops, 2023)

Amarelli's Industry 4.0 Transformation with IoT and Digital Advertisement: Optimizing Operations and Engaging Customers. - Fabrizio Giuliano; Simona Ester Rombo; Mariella Bonomo; Salvatore Iiritano; Luigi Granata; Massimiliano Ruffolo; Ilenia Tinnirello (EDBT/ICDT Workshops, 2023)

Discriminative pattern discovery for the characterization of different network populations. - Fabio Fassetti; Simona E. Rombo; Cristina Serrao (Bioinform., 2023)

Neighborhood based computational approaches for the prediction of lncRNA-disease associations. - Mariella Bonomo; Simona E. Rombo (BMC Bioinform., 2024)