GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (BIBM, 2007)

Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (BIRD, 2008)

Singling out functional similarities in graph databases. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (SEBD, 2008)

Extracting similar sub-graphs across PPI networks. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (ISCIS, 2009)

A technique to search for functional similarities in protein-protein interaction networks. - Valeria Fionda; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (Int. J. Data Min. Bioinform., 2009)

VirusMINT: a viral protein interaction database. - Andrew Chatr-aryamontri; Arnaud Céol; Daniele Peluso; Aurelio Nardozza; Simona Panni; Francesca Sacco; Michele Tinti; Alex Smolyar; Luisa Castagnoli; Marc Vidal; Michael E. Cusick; Gianni Cesareni (Nucleic Acids Res., 2009)

"Master-Slave" Biological Network Alignment. - Nicola Ferraro; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (ISBRA, 2010)

Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract). - Nicola Ferraro; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (SEBD, 2010)

Asymmetric Comparison and Querying of Biological Networks. - Nicola Ferraro; Luigi Palopoli 001; Simona Panni; Simona E. Rombo (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Searching for repetitions in biological networks: methods, resources and tools. - Simona Panni; Simona E. Rombo (Briefings Bioinform., 2015)

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. - M. Sivade Dumousseau; Diego Alonso-López; Mais G. Ammari; Glyn Bradley; Nancy H. Campbell; Arnaud Céol; Gianni Cesareni; Colin W. Combe; Javier De Las Rivas; Noemi del-Toro; Joshua Heimbach; Henning Hermjakob; et al. (BMC Bioinform., 2018)

The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. - Livia Perfetto; Chiara Pastrello; Noemi del-Toro; Margaret J. Duesbury; Marta Iannuccelli; Max Kotlyar; Luana Licata; Birgit Meldal; Kalpana Panneerselvam; Simona Panni; N. Rahimzadeh; Sylvie Ricard-Blum; et al. (Database J. Biol. Databases Curation, 2020)

The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). - Vasundra Touré; Steven Vercruysse; Marcio Luis Acencio; Ruth C. Lovering; Sandra E. Orchard; Glyn Bradley; Cristina Casals-Casas; Claudine Chaouiya; Noemi del-Toro; Åsmund Flobak; Pascale Gaudet; Henning Hermjakob; et al. (Bioinform., 2021)

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. - Blake A. Sweeney; Anton I. Petrov; Carlos Eduardo Ribas; Robert D. Finn; Alex Bateman; Maciej Szymanski; Wojciech M. Karlowski; Stefan E. Seemann; Jan Gorodkin; Jamie J. Cannone; Robin Ray Gutell; Simon Kay; et al. (Nucleic Acids Res., 2021)

The IntAct database: efficient access to fine-grained molecular interaction data. - Noemi del-Toro; Anjali Shrivastava; Eliot Ragueneau; Birgit Meldal; Colin W. Combe; Elisabet Barrera; Livia Perfetto; Karyn How; Prashansa Ratan; Gautam Shirodkar; Odilia Lu; Bálint Mészáros; et al. (Nucleic Acids Res., 2022)

The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study. - Simona Panni; Kalpana Panneerselvam; Pablo Porras; Margaret J. Duesbury; Livia Perfetto; Luana Licata; Henning Hermjakob; Sandra E. Orchard (Database J. Biol. Databases Curation, 2023)