Scalable Repositories for Virtual Clusters. - Paolo Anedda; Simone Leo; Massimo Gaggero; Gianluigi Zanetti (Euro-Par Workshops, 2009)

Biodoop: Bioinformatics on Hadoop. - Simone Leo; Federico Andrea Santoni; Gianluigi Zanetti (ICPP Workshops, 2009)

Pydoop: a Python MapReduce and HDFS API for Hadoop. - Simone Leo; Gianluigi Zanetti (HPDC, 2010)

Using Virtual Clusters to Decouple Computation and Data Management in High Throughput Analysis Applications. - Simone Leo; Paolo Anedda; Massimo Gaggero; Gianluigi Zanetti (PDP, 2010)

Suspending, migrating and resuming HPC virtual clusters. - Paolo Anedda; Simone Leo; Simone Manca; Massimo Gaggero; Gianluigi Zanetti (Future Gener. Comput. Syst., 2010)

SEAL: a distributed short read mapping and duplicate removal tool. - Luca Pireddu; Simone Leo; Gianluigi Zanetti (Bioinform., 2011)

A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive bioinformatics in Galaxy. - Luca Pireddu; Simone Leo; Nicola Soranzo; Gianluigi Zanetti (BCB, 2014)

An automated infrastructure to support high-throughput bioinformatics. - Gianmauro Cuccuru; Simone Leo; Luca Lianas; Michele Muggiri; Andrea Pinna 003; Luca Pireddu; Paolo Uva; Andrea Angius; Giorgio Fotia; Gianluigi Zanetti (HPCS, 2014)

BioBlend.objects: metacomputing with Galaxy. - Simone Leo; Luca Pireddu; Gianmauro Cuccuru; Luca Lianas; Nicola Soranzo; Enis Afgan; Gianluigi Zanetti (Bioinform., 2014)

OpenEHR modeling for genomics in clinical practice. - Cecilia Mascia; Paolo Uva; Simone Leo; Gianluigi Zanetti (Int. J. Medical Informatics, 2018)

The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications. - Michele Cancilla; Laura Canalini; Federico Bolelli; Stefano Allegretti; Salvador Carrión; Roberto Paredes; Jon Ander Gómez; Simone Leo; Marco Enrico Piras; Luca Pireddu; Asaf Badouh; Santiago Marco-Sola; et al. (ICPR, 2020)

The DeepHealth Toolkit: A Key European Free and Open-Source Software for Deep Learning and Computer Vision Ready to Exploit Heterogeneous HPC and Cloud Architectures. - Marco Aldinucci; David Atienza; Federico Bolelli; Mónica Caballero; Iacopo Colonnelli; José Flich; Jon Ander Gómez; David González; Costantino Grana; Marco Grangetto; Simone Leo; Pedro López 001; et al. (Technologies and Applications for Big Data Value, 2022)

AI Support for Accelerating Histopathological Slide Examinations of Prostate Cancer in Clinical Studies. - Mauro Del Rio; Luca Lianas; Oskar Aspegren; Giovanni Busonera; Francesco Versaci; Renata Zelic; Per H. Vincent; Simone Leo; Andreas Pettersson; Olof Akre; Luca Pireddu (ICIAP Workshops (1), 2022)

Packaging research artefacts with RO-Crate. - Stian Soiland-Reyes; Peter Sefton; Mercè Crosas; Leyla Jael Castro; Frederik Coppens; José María Fernández 001; Daniel Garijo; Björn A. Grüning; Marco La Rosa; Simone Leo; Eoghan Ó Carragáin; Marc Portier; et al. (Data Sci., 2022)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)

The EOSC-Life Workflow Collaboratory for the Life Sciences. - Carole A. Goble; Finn Bacall; Stian Soiland-Reyes; Stuart Owen; Ignacio Eguinoa; Bert Droesbeke; Hervé Ménager; Laura Rodríguez-Navas; José María Fernández 001; Björn A. Grüning; Simone Leo; Luca Pireddu; et al. (CoRDI, 2023)

Recording provenance of workflow runs with RO-Crate. - Simone Leo; Michael R. Crusoe; Laura Rodríguez-Navas; Raül Sirvent; Alexander Kanitz; Paul De Geest; Rudolf Wittner; Luca Pireddu; Daniel Garijo; José M. Fernández; Iacopo Colonnelli; Matej Gallo; et al. (CoRR, 2023)

Practical webby FDOs With RO-Crate and FAIR Signposting Experiences and Lessons Learned. - Stian Soiland-Reyes; Peter Sefton; Simone Leo; Leyla Jael Castro; Claus Weiland; Herbert Van de Sompel (FDO, 2024)

WorkflowHub: a registry for computational workflows. - Johan Gustafsson 001; Sean R. Wilkinson; Finn Bacall; Luca Pireddu; Stian Soiland-Reyes; Simone Leo; Stuart Owen; Nick S. Juty; José María Fernández 001; Björn A. Grüning; Tom Brown; Hervé Ménager; et al. (CoRR, 2024)

An Ecosystem of Services for FAIR Computational Workflows. - Sean R. Wilkinson; Johan Gustafsson 001; Finn Bacall; Khalid Belhajjame; Salvador Capella; José María Fernández González; Jacob Fosso Tande; Luiz Gadelha; Daniel Garijo; Patricia Grubel; Björn A. Grüning; Farah Zaib Khan; et al. (CoRR, 2025)