Statistical Methods for the Discovery of Co-Operative Transcription Factors: The Co-bind Code Revised. - Giovanni Lavorgna; Paolo Palazzari; Alessandro Marongiu; Vittorio Rosato; Simone Melchionna; Paolo Verrecchia (IPDPS, 2005)

Lattice Boltzmann-Poisson method for electrorheological nanoflows in ion channels. - Simone Melchionna; Sauro Succi (Comput. Phys. Commun., 2005)

Multiscale Coupling of Molecular Dynamics and Hydrodynamics: Application to DNA Translocation through a Nanopore. - Maria Fyta; Simone Melchionna; Efthimios Kaxiras; Sauro Succi (Multiscale Model. Simul., 2006)

Multiscale Modeling of Biopolymer Translocation Through a Nanopore. - Maria Fyta; Simone Melchionna; Efthimios Kaxiras; Sauro Succi (International Conference on Computational Science (1), 2007)

MUPHY: A parallel high performance MUlti PHYsics/Scale code. - Massimo Bernaschi; Sauro Succi; Maria Fyta; Efthimios Kaxiras; Simone Melchionna; Joy K. Sircar (IPDPS, 2008)

Multiscale Simulation of Nanobiological Flows. - Maria Fyta; Simone Melchionna; Efthimios Kaxiras; Sauro Succi (Comput. Sci. Eng., 2008)

MUPHY: A parallel MUlti PHYsics/scale code for high performance bio-fluidic simulations. - Massimo Bernaschi; Simone Melchionna; Sauro Succi; Maria Fyta; Efthimios Kaxiras; Joy K. Sircar (Comput. Phys. Commun., 2009)

Multiscale Simulation of Cardiovascular flows on the IBM Bluegene/P: Full Heart-Circulation System at Red-Blood Cell Resolution. - Amanda Peters Randles; Simone Melchionna; Efthimios Kaxiras; Jonas Lätt; Joy K. Sircar; Massimo Bernaschi; Mauro Bisson; Sauro Succi (SC, 2010)

A flexible high-performance Lattice Boltzmann GPU code for the simulations of fluid flows in complex geometries. - Massimo Bernaschi; Massimiliano Fatica; Simone Melchionna; Sauro Succi; Efthimios Kaxiras (Concurr. Comput. Pract. Exp., 2010)

Hydrokinetic approach to large-scale cardiovascular blood flow. - Simone Melchionna; Massimo Bernaschi; Sauro Succi; Efthimios Kaxiras; Frank J. Rybicki; Dimitris Mitsouras; Ahmet U. Coskun; Charles L. Feldman (Comput. Phys. Commun., 2010)

Petaflop biofluidics simulations on a two million-core system. - Massimo Bernaschi; Mauro Bisson; Toshio Endo; Satoshi Matsuoka; Massimiliano Fatica; Simone Melchionna (SC, 2011)

Incorporation of smooth spherical bodies in the Lattice Boltzmann method. - Simone Melchionna (J. Comput. Phys., 2011)

Evaluation of Artery Visualizations for Heart Disease Diagnosis. - Michelle Borkin; Krzysztof Gajos; Amanda Peters Randles; Dimitrios Mitsouras; Simone Melchionna; Frank J. Rybicki; Charles L. Feldman; Hanspeter Pfister (IEEE Trans. Vis. Comput. Graph., 2011)

20 petaflops simulation of proteins suspensions in crowding conditions. - Massimo Bernaschi; Mauro Bisson; Massimiliano Fatica; Simone Melchionna (SC, 2013)

Petaflop hydrokinetic simulations of complex flows on massive GPU clusters. - Massimo Bernaschi; Mauro Bisson; Massimiliano Fatica; Simone Melchionna; Sauro Succi (Comput. Phys. Commun., 2013)

Modeling Elastic Walls in Lattice Boltzmann Simulations of Arterial Blood Flow. - Xenia Descovich; Giuseppe Pontrelli; Sauro Succi; Simone Melchionna; Manfred Bammer (Simul. Notes Eur., 2013)

The Lattice Boltzmann Method and Multiscale Hemodynamics: Recent Advances and Persepectives. - Giuseppe Pontrelli; Ian Halliday; Simone Melchionna; Timothy J. Spencer; Sauro Succi (Simul. Notes Eur., 2013)

From medical imaging to computer simulation of fractional flow reserve in four coronary artery trees. - Simone Melchionna; Stefania Fortini; Massimo Bernaschi; Mauro Bisson; Nahyup Kang; Hyong-Euk Lee (Computer-Aided Diagnosis, 2014)

In-silico analysis of airflow dynamics and particle transport within a human nasal cavity. - Manash Pratim Borthakur; Sauro Succi; Fabio Sterpone; Franck Pérot; Anxhelo Diko; Simone Melchionna (J. Comput. Sci., 2021)

Comparison of effective and stable Langevin dynamics integrators. - Bogdan Tanygin; Simone Melchionna (Comput. Phys. Commun., 2024)