A Fast Noise Reduction Driven Distance-Based Phylogenetic Algorithm. - Francesca Tria; Emanuele Caglioti; Vittorio Loreto; Simone Pompei (BIOCOMP, 2010)

On the accuracy of language trees - Simone Pompei; Vittorio Loreto; Francesca Tria (CoRR, 2011)

Metacommunity structure preserves genome diversity in the presence of gene-specific selective sweeps under moderate rates of horizontal gene transfer. - Simone Pompei; Edoardo Bella; Joshua S. Weitz; Jacopo Grilli; Marco Cosentino Lagomarsino (PLoS Comput. Biol., 2023)