Efficient 3-D visualization of cellular structures through reuse of multi-focal 2-D images. - Sinan Kockara; Nawab Ali; Serhan Dagtas (IRI, 2006)

Towards 3-dimensional and optimized design of wireless networks for smart environments. - Sinan Kockara; Serhan Dagtas (J. Comput. Sci. Coll., 2006)

Two-way semi-automatic registration in augmented reality system. - Tansel Halic; Sinan Kockara; Coskun Bayrak; Kamran Iqbal; Richard Rowe (SMC, 2007)

Collision detection: A survey. - Sinan Kockara; Tansel Halic; Kamran Iqbal; Coskun Bayrak; Richard Rowe (SMC, 2007)

Real-time Minute Change Detection on GPU for Cellular and Remote Sensor Imaging. - Sinan Kockara; Tansel Halic; Coskun Bayrak (AINA Workshops, 2009)

Mining Positional Association Super-Rules on Fixed-Size Protein Sequence Motifs. - Bernard Chen 001; Sinan Kockara (BIBE, 2009)

Soft Tissue Deformation and Optimized Data Structures for Mass Spring Methods. - Tansel Halic; Sinan Kockara; Coskun Bayrak; Richard Rowe; Bernard Chen 001 (BIBE, 2009)

Balls Hierarchy: Image Segmentation by Graph Spanner. - Sinan Kockara; Vincent Yip; Mutlu Mete (ISBI, 2009)

Balls Hierarchy: A Proximity Query for Metric Spaces and Covering Theorem. - Sinan Kockara (NBiS, 2009)

A Scooping Simulation Framework for Artificial Cervical Disc Replacement Surgery. - Sinan Kockara; Emre Ermisoglu; Fatih Sen; Tansel Halic; Coskun Bayrak; Richard Rowe (SMC, 2009)

Contact Detection Algorithms. - Sinan Kockara; Tansel Halic; Coskun Bayrak; Kamran Iqbal; Richard Rowe (J. Comput., 2009)

Extraction of Protein Sequence Motifs Information by Bi-Clustering Algorithm. - Vincent Yip; Bernard Chen 001; Sinan Kockara (BIOCOMP, 2010)

A soft kinetic data structure for lesion border detection. - Sinan Kockara; Mutlu Mete; Vincent Yip; Brendan Lee; Kemal Aydin (Bioinform., 2010)

Mixed reality simulation of rasping procedure in artificial cervical disc replacement (ACDR) surgery. - Tansel Halic; Sinan Kockara; Coskun Bayrak; Richard Rowe (BMC Bioinform., 2010)

Analysis of density based and fuzzy c-means clustering methods on lesion border extraction in dermoscopy images. - Sinan Kockara; Mutlu Mete; Bernard Chen 001; Kemal Aydin (BMC Bioinform., 2010)

Efficient Calculation of Structural Similarity Threshold for the SCAN Network Clustering Algorithm. - Vincent Yip; Sinan Kockara; Chenyi Hu (BIBM, 2011)

An improved border detection in dermoscopy images for density based clustering. - Sait Suer; Sinan Kockara; Mutlu Mete (BMC Bioinform., 2011)

Fast density-based lesion detection in dermoscopy images. - Mutlu Mete; Sinan Kockara; Kemal Aydin (Comput. Medical Imaging Graph., 2011)

Fractals for Malignancy Detection in Dermoscopy Images. - Sinan Kockara; Mutlu Mete; Tansel Halic; Nurcan Yuruk; Muhyeddin Ercan; Ashley Lawrence (ICHI, 2015)

GPUSCAN: GPU-Based Parallel Structural Clustering Algorithm for Networks. - Thomas Ryan Stovall; Sinan Kockara; Recep Avci (IEEE Trans. Parallel Distributed Syst., 2015)

Density-based parallel skin lesion border detection with webCL. - James Lemon; Sinan Kockara; Tansel Halic; Mutlu Mete (BMC Bioinform., 2015)

Virtual Intraoperative Cholangiogram Using WebCL. - Alexander Yu; Doga Demirel; Tansel Halic; Sinan Kockara (MMVR, 2016)

Abrupt skin lesion border cutoff measurement for malignancy detection in dermoscopy images. - Sertan Kaya; Mustafa Bayraktar; Sinan Kockara; Mutlu Mete; Tansel Halic; Halle E. Field; Henry K. Wong (BMC Bioinform., 2016)

Texture based skin lesion abruptness quantification to detect malignancy. - Recep Erol; Mustafa Bayraktar; Sinan Kockara; Sertan Kaya; Tansel Halic (BMC Bioinform., 2017)

Local edge-enhanced active contour for accurate skin lesion border detection. - Mustafa Bayraktar; Sinan Kockara; Tansel Halic; Mutlu Mete; Henry K. Wong; Kamran Iqbal (BMC Bioinform., 2019)

Partition-based optimization model for generative anatomy modeling language (POM-GAML). - Doga Demirel; Berk Cetinsaya; Tansel Halic; Sinan Kockara; Shahryar Ahmadi (BMC Bioinform., 2019)

Virtual Rotator Cuff Arthroscopic Skill Trainer: Results and Analysis of a Preliminary Subject Study. - Jake Farmer; Mustafa Tunc; Daniel Ahmadi; Doga Demirel; Tansel Halic; Venkata Sreekanth Arikatla; Sinan Kockara; Shahryar Ahmadi (ICISDM, 2020)

A partition-based optimization model and its performance benchmark for Generative Anatomy Modeling Language. - Doga Demirel; Berk Cetinsaya; Tansel Halic; Sinan Kockara; Dirk Reiners; Shahryar Ahmadi; Venkata Sreekanth Arikatla (Comput. Biol. Medicine, 2020)

Development of Virtual Skill Trainers and Their Validation Study Analysis Using Machine Learning. - Seema Shedage; Jake Farmer; Doga Demirel; Tansel Halic; Sinan Kockara; Venkata Sreekanth Arikatla; Kevin W. Sexton; Shahryar Ahmadi (ICISDM, 2021)

Scoring metrics for assessing skills in arthroscopic rotator cuff repair: performance comparison study of novice and expert surgeons. - Doga Demirel; Bryce Palmer; Gunnar Sundberg; Bayazit Karaman; Tansel Halic; Sinan Kockara; Nizamettin Kockara; Mark Edward Rogers; Shahryar Ahmadi (Int. J. Comput. Assist. Radiol. Surg., 2022)

Unified Framework for Real-Time Fluid Simulation in Virtual Rotator Cuff Arthroscopic Skill Trainer (ViRCAST). - Aditya Dendukuri; Mustafa Tunc; Doga Demirel; Sinan Kockara; Tansel Halic (BIBE, 2023)

GPU Based Position Based Dynamics for Surgical Simulators. - Doga Demirel; Jason Smith; Sinan Kockara; Tansel Halic (HCI (36), 2023)

Evaluation of WebRTC in the Cloud for Surgical Simulations: A Case Study on Virtual Rotator Cuff Arthroscopic Skill Trainer (ViRCAST). - William Kwabla; Furkan Dinc; Khalil Oumimoun; Sinan Kockara; Tansel Halic; Doga Demirel; Sreekanth Arikatla; Shahryar Ahmadi (HCI (31), 2023)

Enhancing Medical Training Through Learning From Mistakes by Interacting With an Ill-Trained Reinforcement Learning Agent. - Yasar C. Kakdas; Sinan Kockara; Tansel Halic; Doga Demirel (IEEE Trans. Learn. Technol., 2024)

TBPGen: Total Body Photography Generator and AI-Driven Detection of Multiple Skin Lesions. - Ertugrul Sagdic; Sinan Kockara (ICHI, 2025)

Crack-Free Multi-Resolution Dynamic Volume Refinement for Physics-Based Bone Drilling and Shaving in Arthroscopic Procedures. - Mustafa Tunc; Doga Demirel; Sinan Kockara; Tansel Halic (VR Workshops, 2025)