A Probabilistic Method for Prediction of microRNA-target Interactions. - Hasan Ogul; Sinan U. Umu; Y. Yener Tuncel; Mahinur S. Akkaya (IJCCI (NCTA), 2011)

Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling. - Stinus Lindgreen; Sinan Ugur Umu; Alicia Sook-Wei Lai; Hisham Eldai; Wenting Liu; Stephanie McGimpsey; Nicole E. Wheeler; Patrick J. Biggs; Nick R. Thomson; Lars Barquist; Anthony M. Poole; Paul P. Gardner (PLoS Comput. Biol., 2014)

A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life. - Sinan Ugur Umu; Paul P. Gardner (Bioinform., 2017)

A high-resolution map of the human small non-coding transcriptome. - Tobias Fehlmann; Christina Backes; Julia Alles; Ulrike Fischer; Martin Hart; Fabian Kern; Hilde Langseth; Trine Rounge; Sinan Ugur Umu; Mustafa Kahraman; Thomas Laufer; Jan Haas; et al. (Bioinform., 2018)

MirGeneDB 2.1: toward a complete sampling of all major animal phyla. - Bastian Fromm; Eirik Høye; Diana Domanska; Xiangfu Zhong; Ernesto Aparicio-Puerta; Vladimir Ovchinnikov; Sinan U. Umu; Peter J. Chabot; Wenjing Kang; Morteza Aslanzadeh; Marcel Tarbier; Emilio Mármol-Sánchez; et al. (Nucleic Acids Res., 2022)