Density parameter estimation for finding clusters of homologous proteins - tracing actinobacterial pathogenicity lifestyles. - Richard Röttger; Prabhav Kalaghatgi; Peng Sun 008; Siomar de Castro Soares; Vasco Ariston de Carvalho Azevedo; Tobias Wittkop; Jan Baumbach (Bioinform., 2013)

The impact of the quality filter for RNA-Seq data over differential expression profile. - Pablo C. Gomes de Sa; Siomar de Castro Soares; Adonney A. de Oliveira Veras; Anne C. Pinto; Luis Guimarães; Vasco Ariston de Carvalho Azevedo; Artur Silva; Rommel Ramos (IWBBIO, 2014)

Genomic Islands: an overview of current software and future improvements. - Siomar de Castro Soares; Letícia de Castro Oliveira; Arun Kumar Jaiswal; Vasco Ariston de Carvalho Azevedo (J. Integr. Bioinform., 2016)

LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis. - Eudes Barbosa; Richard Röttger; Anne-Christin Hauschild; Siomar de Castro Soares; Sebastian Böcker; Vasco Ariston de Carvalho Azevedo; Jan Baumbach (J. Integr. Bioinform., 2017)

An immunoinformatics-based designed multi-epitope candidate vaccine (mpme-VAC/STV-1) against Mycoplasma pneumoniae. - Thaís Cristina Vilela Rodrigues; Arun Kumar Jaiswal; Marcela Rezende Lemes; Marcos Vinícius da Silva; Helioswilton Sales-Campos; Luiz Carlos Júnior Alcântara; Sthephane Fraga de Oliveira Tosta; Rodrigo Bentes Kato; Khalid J. Alzahrani; Debmalya Barh; Vasco Ariston de Carvalho Azevedo; Sandeep Tiwari; et al. (Comput. Biol. Medicine, 2022)

Genomic Characterization of Lactobacillus delbrueckii Strains with Probiotics Properties. - Luís Cláudio Lima De Jesus; Flávia Figueira Aburjaile; Thiago De Jesus Sousa; Andrei Giacchetto Felice; Siomar de Castro Soares; Luiz Carlos Júnior Alcântara; Vasco Ariston de Carvalho Azevedo (Frontiers Bioinform., 2022)

Immunoinformatics-guided design of a multi-valent vaccine against Rotavirus and Norovirus (ChRNV22). - Amanda de Oliveira Matos; Thaís Cristina Vilela Rodrigues; Sandeep Tiwari; Pedro Henrique dos Santos Dantas; Geraldo Rodrigues Sartori; Vasco Ariston de Carvalho Azevedo; João Herminio Martins Da Silva; Siomar de Castro Soares; Marcelle Silva-Sales; Helioswilton Sales-Campos (Comput. Biol. Medicine, 2023)

Uncovering the role of TREM-1 in celiac disease: In silico insights into the recognition of gluten-derived peptides and inflammatory mechanisms. - Amanda de Oliveira Matos; Pedro Henrique dos Santos Dantas; José Rodrigues do Carmo Neto; Mike Telemaco Contreras Colmenares; Andrei Giacchetto Felice; Siomar de Castro Soares; Marcelle Silva-Sales; Helioswilton Sales-Campos (Comput. Biol. Medicine, 2025)