Leveraging genetic interactions for adverse drug-drug interaction prediction. - Sheng Qian; Siqi Liang 002; Haiyuan Yu (PLoS Comput. Biol., 2019)

Revealing new therapeutic opportunities through drug target prediction: a class imbalance-tolerant machine learning approach. - Siqi Liang 002; Haiyuan Yu; Jonathan D. Wren (Bioinform., 2020)

SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein-protein binding affinity. - Gen Li; Swagata Pahari; Adithya Krishna Murthy; Siqi Liang 002; Robert Fragoza; Haiyuan Yu; Emil Alexov (Bioinform., 2021)