Predictive Inference: An Introduction (Seymour Geisser). - Siva Sivaganesan (SIAM Rev., 1994)

An Introduction to the Bootstrap (Bradley Efron and Robert J. Tibshirani). - Siva Sivaganesan (SIAM Rev., 1994)

Bayesian infinite mixture model based clustering of gene expression profiles. - Mario Medvedovic; Siva Sivaganesan (Bioinform., 2002)

Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset. - Xiangdong Liu; Siva Sivaganesan; Ka Yee Yeung; Junhai Guo; Roger Eugene Bumgarner; Mario Medvedovic (Bioinform., 2006)

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments. - Maureen A. Sartor; Craig R. Tomlinson; Scott C. Wesselkamper; Siva Sivaganesan; George D. Leikauf; Mario Medvedovic (BMC Bioinform., 2006)

Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data. - Xiangdong Liu; Walter J. Jessen; Siva Sivaganesan; Bruce J. Aronow; Mario Medvedovic (BMC Bioinform., 2007)

Prior Information Based Bayesian Infinite Mixture Model. - Zhen Hu; Siva Sivaganesan; Mario Medvedovic (ISAIM, 2010)

A semi-parametric Bayesian model for unsupervised differential co-expression analysis. - Johannes M. Freudenberg; Siva Sivaganesan; Michael Wagner 010; Mario Medvedovic (BMC Bioinform., 2010)

Generalized random set framework for functional enrichment analysis using primary genomics datasets. - Johannes M. Freudenberg; Siva Sivaganesan; Mukta Phatak; Kaustubh Shinde; Mario Medvedovic (Bioinform., 2011)

Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules. - Jing Chen 021; Zhen Hu; Mukta Phatak; John Reichard; Johannes M. Freudenberg; Siva Sivaganesan; Mario Medvedovic (PLoS Comput. Biol., 2013)

Predicting mechanism of action of cellular perturbations with pathway activity signatures. - Yan Ren; Siva Sivaganesan; Nicholas A. Clark; Lixia Zhang; Jacek Biesiada; Wen Niu; David R. Plas; Mario Medvedovic (Bioinform., 2020)