Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin. - Xiaojing Wang; Wu Wei; Siyuan Zheng; Zhi-Wei Cao; Yixue Li (International Conference on Computational Science (2), 2007)

MPSQ: a web tool for protein-state searching. - Siyuan Zheng; Jia Sheng; Chuan Wang; Xiaojing Wang; Yao Yu; Yun Li; Alex Michie; Jianliang Dai; Yang Zhong; Pei Hao; Lei Liu; Yixue Li (Bioinform., 2008)

Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. - Xiaojing Wang; Di Wu; Siyuan Zheng; Jing Sun; Lin Tao; Yixue Li; Zhi-Wei Cao (BMC Bioinform., 2008)

Human gene expression sensitivity according to large scale meta-analysis. - Pei Hao; Siyuan Zheng; Jie Ping; Kang Tu; Christian Gieger; Rui Wang-Sattler; Yang Zhong; Yixue Li (BMC Bioinform., 2009)

GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction. - Yao Yu; Kang Tu; Siyuan Zheng; Yun Li; Guohui Ding 001; Jie Ping; Pei Hao; Yixue Li (BMC Bioinform., 2009)

Genome-Wide DNA Methylation Profiling in 40 Breast Cancer Cell Lines. - Leng Han; Siyuan Zheng; Shuying Sun; Tim Hui-Ming Huang; Zhongming Zhao (ICIC (1), 2010)

Application of Pearson correlation coefficient (PCC) and Kolmogorov-Smirnov distance (KSD) metrics to identify disease-specific biomarker genes. - Hung-Chung Huang; Siyuan Zheng; Zhongming Zhao (BMC Bioinform., 2010)

PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach. - Xiaofeng Liu 005; Sisheng Ouyang; Biao Yu; Yabo Liu; Kai Huang; Jiayu Gong; Siyuan Zheng; Zhihua Li; Honglin Li 003; Hualiang Jiang (Nucleic Acids Res., 2010)

dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. - Peilin Jia; Siyuan Zheng; Jirong Long; Wei Zheng; Zhongming Zhao (Bioinform., 2011)

Identifying the key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma using a systems biology approach. - Siyuan Zheng; Zhongming Zhao (BMC Bioinform., 2011)

Association of Feature Gene Expression with Structural Fingerprints of Chemical Compounds. - Yun Li; Kang Tu; Siyuan Zheng; Jingfang Wang; Yixue Li; Pei Hao; Xuan Li (J. Bioinform. Comput. Biol., 2011)

PRADA: pipeline for RNA sequencing data analysis. - Wandaliz Torres-García; Siyuan Zheng; Andrey Sivachenko; Rahulsimham Vegesna; Qianghu Wang; Rong Yao; Michael F. Berger; John N. Weinstein; Gad Getz; Roel G. W. Verhaak (Bioinform., 2014)

iPTAM on mobile phone. - Siyuan Zheng; Zhiying Zhou; Wei Gao (SIGGRAPH ASIA Mobile Graphics and Interactive Applications, 2016)

Lake trial of an underwater acoustic cross-media network testbed. - Siyuan Zheng; Xiaoyang Wang; Weihua Jiang; Feng Tong (ICSPCC, 2017)

Doppler correction of mobile acoustic communication via adjustable AD sampling rate. - Xiaoyang Wang; Siyuan Zheng; Qiuyang Tao; Fumin Zhang 001; Adtjn Song; Feng Tong (WUWNet, 2018)

TumorFusions: an integrative resource for cancer-associated transcript fusions. - Xin Hu; Qianghu Wang; Ming Tang; Floris P. Barthel; Samirkumar B. Amin; Kosuke Yoshihara; Frederick M. Lang; Emmanuel Martínez-Ledesma; Soo Hyun Lee; Siyuan Zheng; Roel G. W. Verhaak (Nucleic Acids Res., 2018)

Design of a UW-IoT Network Test Platform for Shallow Water Environment. - Siyuan Zheng; Weihua Jiang; Feng Tong; Bin Li; Yougan Chen (WUWNet, 2019)

Design and Evaluation of an Acoustic Modem for a Small Autonomous Unmanned Vehicle. - Siyuan Zheng; Feng Tong; Bin Li; Qiuyang Tao; Aijun Song; Fumin Zhang 001 (Sensors, 2019)

Deep learning of pharmacogenomics resources: moving towards precision oncology. - Yu-Chiao Chiu; Hung-I Harry Chen; Aparna Gorthi; Milad Mostavi; Siyuan Zheng; Yufei Huang 001; Yidong Chen 002 (Briefings Bioinform., 2020)

Speech Emotion Recognition Based on Acoustic Segment Model. - Siyuan Zheng; Jun Du 002; Hengshun Zhou; Xue Bai; Chin-Hui Lee 001; Shipeng Li 001 (ISCSLP, 2021)

Keys as Secret Messages: Provably Secure and Efficiency-balanced Steganography on Blockchain. - Siyuan Zheng; Changqing Yin; Bin Wu 011 (ISPA/BDCloud/SocialCom/SustainCom, 2021)

Malicious Conspiracy on Permissioned Blockchain to Mount Denial-of-endorsement Attacks. - Siyuan Zheng; Changqing Yin; Bin Wu 011 (ISPA/BDCloud/SocialCom/SustainCom, 2021)

PCAT: an integrated portal for genomic and preclinical testing data of pediatric cancer patient-derived xenograft models. - Juechen Yang; Qilin Li; Nighat Noureen; Yanbing Fang; Raushan Kurmasheva; Peter J. Houghton; Xiaojing Wang; Siyuan Zheng (Nucleic Acids Res., 2021)

A Study on Joint Modeling and Data Augmentation of Multi-Modalities for Audio-Visual Scene Classification. - Qing Wang 008; Jun Du 002; Siyuan Zheng; Yunqing Li; Yajian Wang; Yuzhong Wu; Hu Hu; Chao-Han Huck Yang; Sabato Marco Siniscalchi; Yannan Wang; Chin-Hui Lee 001 (ISCSLP, 2022)

sEMG-Based Gain-Tuned Compliance Control for the Lower Limb Rehabilitation Robot during Passive Training. - Junjie Tian; Hongbo Wang; Siyuan Zheng; Yuansheng Ning; Xingchao Zhang; Jianye Niu; Luige Vladareanu (Sensors, 2022)

EHGFormer: An efficient hypergraph-injected transformer for 3D human pose estimation. - Siyuan Zheng; Weiqun Cao (Image Vis. Comput., 2025)

LLMs on Trial: Evaluating Judicial Fairness for Large Language Models. - Yiran Hu; Zongyue Xue; Haitao Li 006; Siyuan Zheng; Qingjing Chen; Shaochun Wang; Xihan Zhang; Ning Zheng; Yun Liu; Qingyao Ai; Yiqun Liu 001; Charles L. A. Clarke; et al. (CoRR, 2025)