On Optimizing Distance-Based Similarity Search for Biological Databases. - Rui Mao 001; Weijia Xu; Smriti R. Ramakrishnan; Glen Nuckolls; Daniel P. Miranker (CSB, 2005)

A fast coarse filtering method for peptide identification by mass spectrometry. - Smriti R. Ramakrishnan; Rui Mao 001; Aleksey A. Nakorchevskiy; John T. Prince; Willard S. Willard; Weijia Xu; Edward M. Marcotte; Daniel P. Miranker (Bioinform., 2006)

Anytime k-nearest neighbor search for database applications. - Weijia Xu; Daniel P. Miranker; Rui Mao 001; Smriti R. Ramakrishnan (ICDE Workshops, 2008)

Mining gene functional networks to improve mass-spectrometry-based protein identification. - Smriti R. Ramakrishnan; Christine Vogel; Taejoon Kwon; Luiz O. F. Penalva; Edward M. Marcotte; Daniel P. Miranker (Bioinform., 2009)

Integrating shotgun proteomics and mRNA expression data to improve protein identification. - Smriti R. Ramakrishnan; Christine Vogel; John T. Prince; Rong Wang; Zhihua Li; Luiz O. F. Penalva; Margaret Myers; Edward M. Marcotte; Daniel P. Miranker (Bioinform., 2009)

An inverted index for mass spectra similarity query and comparison with a metric-space method: case study. - Rui Mao 001; Smriti R. Ramakrishnan; Glen Nuckolls; Daniel P. Miranker (SISAP, 2010)

Balancing reducer skew in MapReduce workloads using progressive sampling. - Smriti R. Ramakrishnan; Garret Swart; Aleksey Urmanov (SoCC, 2012)