No Promoter Left Behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites. - Sneha Mitra; Leelavati Narlikar (Bioinform., 2016)

DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP. - Sneha Mitra; Anushua Biswas; Leelavati Narlikar (PLoS Comput. Biol., 2018)

RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility Data to Elucidate Genome-Wide Chromatin Occupancy. - Sneha Mitra; Jianling Zhong; David M. MacAlpine; Alexander J. Hartemink (RECOMB, 2020)