Structure of Protein Interaction Networks and Their Implications on Drug Design. - Takeshi Hase; Hiroshi Tanaka; Yasuhiro Suzuki; So Nakagawa; Hiroaki Kitano (PLoS Comput. Biol., 2009)

gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes. - So Nakagawa; Mahoko Ueda Takahashi (Database J. Biol. Databases Curation, 2016)

Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences. - Kirill Kryukov; Mahoko Ueda Takahashi; So Nakagawa; Tadashi Imanishi (Bioinform., 2019)

Efficient compression of SARS-CoV-2 genome data using Nucleotide Archival Format. - Kirill Kryukov; Lihua Jin; So Nakagawa (Patterns, 2022)

Exploring the hidden world of RNA viruses with a transformer-based tool. - So Nakagawa; Shoichi Sakaguchi (Patterns, 2024)