Beyond the proteome: Mass Spectrometry Special Interest Group (MS-SIG) at ISMB/ECCB 2013. - So Young Ryu; Samuel H. Payne; Christoph Schaab; Wenzhong Xiao (Bioinform., 2014)

Detecting differential protein expression in large-scale population proteomics. - So Young Ryu; Wei-Jun Qian; David G. Camp II; Richard D. Smith; Ronald G. Tompkins; Ronald W. Davis; Wenzhong Xiao (Bioinform., 2014)

Detecting common genomic mechanism between diseases using paired sparse canonical correlation analysis. - So Young Ryu; Ronald W. Davis; Wenzhong Xiao (ICMLC, 2016)

Measuring Pairwise Similarity of Tandem Mass Spectra Using Pair Hidden Markov Model. - So Young Ryu (ICMLC, 2018)

Pediatric Patient Traumatic Brain Injury Prediction1. - Franklin Fuchs; Omar Kamal; Hanao Li; Mihye Ahn; So Young Ryu (BIBM, 2020)

VA-PRT: A Visualization Tool for Analyzing Post-translational Modification Retention Times. - Riley Brenner; Kurtis Bertauche; Alexander Choi; So Young Ryu (BIBM, 2021)