Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders. - Soeren Lukassen; Foo Wei Ten; Lukás Adam; Roland Eils; Christian Conrad (Nat. Mach. Intell., 2020)

Segmenting Brain Tumors in Multi-modal MRI Scans Using a 3D SegNet Architecture. - Nabil Jabareen; Soeren Lukassen (BrainLes@MICCAI (1), 2021)

ISImed: A Framework for Self-Supervised Learning using Intrinsic Spatial Information in Medical Images. - Nabil Jabareen; Dongsheng Yuan; Soeren Lukassen (CoRR, 2024)