Complex Aggregates over Clusters of Elements. - Celine Vens; Sofie Van Gassen; Tom Dhaene; Yvan Saeys (ILP, 2014)

Unsupervised Trajectory Inference Using Graph Mining. - Leen De Baets; Sofie Van Gassen; Tom Dhaene; Yvan Saeys (CIBB, 2015)

Machine Learning Challenges for Single Cell Data. - Sofie Van Gassen; Tom Dhaene; Yvan Saeys (ECML/PKDD (3), 2016)

GroupEnc: encoder with group loss for global structure preservation. - David Novak; Sofie Van Gassen; Yvan Saeys (CoRR, 2023)