Analyzing text in search of bio-molecular events: a high-precision machine learning framework. - Sofie Van Landeghem; Yvan Saeys; Bernard De Baets; Yves Van de Peer (BioNLP@HLT-NAACL (Shared Task), 2009)

Integration of Static Relations to Enhance Event Extraction from Text. - Sofie Van Landeghem; Sampo Pyysalo; Tomoko Ohta; Yves Van de Peer (BioNLP@ACL, 2010)

Discriminative and informative features for biomolecular text mining with ensemble feature selection. - Sofie Van Landeghem; Thomas Abeel; Yvan Saeys; Yves Van de Peer (Bioinform., 2010)

Highlights of the BioTM 2010 workshop on advances in bio text mining. - Thomas Abeel; Sofie Van Landeghem; Roser Morante; Vincent Van Asch; Yves Van de Peer; Walter Daelemans; Yvan Saeys (BMC Bioinform., 2010)

Event based text mining for integrated network construction. - Yvan Saeys; Sofie Van Landeghem; Yves Van de Peer (MLSB, 2010)

Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction. - Sofie Van Landeghem; Thomas Abeel; Bernard De Baets; Yves Van de Peer (BioNLP@ACL (Shared Task), 2011)

EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions. - Sofie Van Landeghem; Filip Ginter; Yves Van de Peer; Tapio Salakoski (BioNLP@ACL, 2011)

U-Compare bio-event meta-service: compatible BioNLP event extraction services. - Yoshinobu Kano; Jari Björne; Filip Ginter; Tapio Salakoski; Ekaterina Buyko; Udo Hahn; K. Bretonnel Cohen; Karin Verspoor; Christophe Roeder; Lawrence E. Hunter; Halil Kilicoglu; Sabine Bergler; et al. (BMC Bioinform., 2011)

High-Precision Bio-molecular Event Extraction from Text Using Parallel Binary Classifiers. - Sofie Van Landeghem; Bernard De Baets; Yves Van de Peer; Yvan Saeys (Comput. Intell., 2011)

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. - Jari Björne; Sofie Van Landeghem; Sampo Pyysalo; Tomoko Ohta; Filip Ginter; Yves Van de Peer; Sophia Ananiadou; Tapio Salakoski (BioNLP@HLT-NAACL, 2012)

Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations. - Sofie Van Landeghem; Kai Hakala; Samuel Rönnqvist; Tapio Salakoski; Yves Van de Peer; Filip Ginter (Adv. Bioinformatics, 2012)

Semantically linking molecular entities in literature through entity relationships. - Sofie Van Landeghem; Jari Björne; Thomas Abeel; Bernard De Baets; Tapio Salakoski; Yves Van de Peer (BMC Bioinform., 2012)

EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction. - Kai Hakala; Sofie Van Landeghem; Tapio Salakoski; Yves Van de Peer; Filip Ginter (BioNLP@ACL (Shared Task), 2013)

Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures. - Sofie Van Landeghem; Suwisa Kaewphan; Filip Ginter; Yves Van de Peer (BioNLP@ACL, 2013)

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis. - Kai Hakala; Sofie Van Landeghem; Tapio Salakoski; Yves Van de Peer; Filip Ginter (BMC Bioinform., 2015)

Cell line name recognition in support of the identification of synthetic lethality in cancer from text. - Suwisa Kaewphan; Sofie Van Landeghem; Tomoko Ohta; Yves Van de Peer; Filip Ginter; Sampo Pyysalo (Bioinform., 2016)

Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks. - Sofie Van Landeghem; Thomas Van Parys; Marieke Dubois; Dirk Inzé; Yves Van de Peer (BMC Bioinform., 2016)

Multi hash embeddings in spaCy. - Lester James V. Miranda; Ákos Kádár; Adriane Boyd; Sofie Van Landeghem; Anders Søgaard; Matthew Honnibal (CoRR, 2022)