RNA-RNA interaction prediction using genetic algorithm. - Soheila Montaseri; Fatemeh Zare-Mirakabad; Nasrollah Moghadam Charkari (Algorithms Mol. Biol., 2014)

Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction. - Soheila Montaseri; Fatemeh Zare-Mirakabad; Mohammad Ganjtabesh (J. Bioinform. Comput. Biol., 2017)

ShaKer: RNA SHAPE prediction using graph kernel. - Stefan Mautner; Soheila Montaseri; Milad Miladi; Martin Raden; Fabrizio Costa; Rolf Backofen (Bioinform., 2019)

Integration of accessibility data from structure probing into RNA-RNA interaction prediction. - Milad Miladi; Soheila Montaseri; Rolf Backofen; Martin Raden (Bioinform., 2019)