CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data. - David A. duVerle; Sohiya Yotsukura; Seitaro Nomura; Hiroyuki Aburatani; Koji Tsuda (BMC Bioinform., 2016)

Exploring phenotype patterns of breast cancer within somatic mutations: a modicum in the intrinsic code. - Sohiya Yotsukura; Masayuki Karasuyama; Ichigaku Takigawa; Hiroshi Mamitsuka (Briefings Bioinform., 2017)

Computational recognition for long non-coding RNA (lncRNA): Software and databases. - Sohiya Yotsukura; David duVerle; Timothy Hancock; Yayoi Natsume-Kitatani; Hiroshi Mamitsuka (Briefings Bioinform., 2017)