Inference and Prediction of Courses of the Diseases Caused by Pathologic Viruses by Estimating Molecular Evolution of Within-host Virus. - Fengrong Ren; Soichi Ogishima; Hiroshi Tanaka (MedInfo, 2001)

A New Algorithm for Analysis of Within-Host HIV-1 Evolution. - Fengrong Ren; Soichi Ogishima; Hiroshi Tanaka (Pacific Symposium on Biocomputing, 2001)

BioCichlid: central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network. - Ryosuke R. Ishiwata; Masaki S. Morioka; Soichi Ogishima; Hiroshi Tanaka (Bioinform., 2009)

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. - Toshiaki Katayama; Mark D. Wilkinson; Rutger A. Vos; Takeshi Kawashima; Shuichi Kawashima; Mitsuteru Nakao; Yasunori Yamamoto; Hong-Woo Chun; Atsuko Yamaguchi; Shin Kawano; Jan Aerts; Kiyoko F. Aoki-Kinoshita; et al. (J. Biomed. Semant., 2011)

AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease. - Satoshi Mizuno; Risa Iijima; Soichi Ogishima; Masataka Kikuchi; Yukiko Matsuoka; Samik Ghosh; Tadashi Miyamoto; Akinori Miyashita; Ryozo Kuwano; Hiroshi Tanaka (BMC Syst. Biol., 2012)

Online Population-Based Patient Registry to Collect and Share Health-related Data of Rare Disease Patients. - Mizuki Morita; Soichi Ogishima; Kunihiro Nishimura; Eiji Aramaki; Tateo Ito (AAAI Spring Symposium: Data Driven Wellness, 2013)

Interactive Platform for Semantic Gene Expression Analysis of Alzheimer's Disease. - Toshiaki Katayama; Masataka Kikuchi; Soichi Ogishima (SWAT4LS, 2013)

Analysis of l-glutamic acid fermentation by using a dynamic metabolic simulation model of Escherichia coli. - Yousuke Nishio; Soichi Ogishima; Masao Ichikawa; Yohei Yamada; Yoshihiro Usuda; Tadashi Masuda; Hiroshi Tanaka (BMC Syst. Biol., 2013)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

Integrated Database And Knowledge Base For Genomic Prospective Cohort Study In Tohoku Medical Megabank Toward Personalized Prevention And Medicine. - Soichi Ogishima; Takako Takai; Kazuro Shimokawa; Satoshi Nagaie; Hiroshi Tanaka; Jun Nakaya (MedInfo, 2015)

Detection of periodic patterns in microarray data reveals novel oscillating transcripts of biological rhythms in Ciona intestinalis. - Hiromi Matsumae; Ryosuke R. Ishiwata; Toshifumi Minamoto; Norio Ishida; Soichi Ogishima; Hiroshi Tanaka (Artif. Life Robotics, 2015)

Implementation of linked data in the life sciences at BioHackathon 2011. - Kiyoko F. Aoki-Kinoshita; Akira R. Kinjo; Mizuki Morita; Yoshinobu Igarashi; Yi-an Chen; Yasumasa Shigemoto; Takatomo Fujisawa; Yukie Akune; Takeo Katoda; Anna Kokubu; Takaaki Mori; Mitsuteru Nakao; et al. (J. Biomed. Semant., 2015)

Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design. - Takako Takai-Igarashi; Kengo Kinoshita; Masao Nagasaki; Soichi Ogishima; Naoki Nakamura; Sachiko Nagase; Satoshi Nagaie; Tomo Saito; Fuji Nagami; Naoko Minegishi; Yoichi Suzuki; Kichiya Suzuki; et al. (BMC Medical Informatics Decis. Mak., 2017)

The Human Phenotype Ontology in 2017. - Sebastian Köhler 001; Nicole A. Vasilevsky; Mark Engelstad; Erin Foster; Julie A. McMurry; Ségolène Aymé; Gareth Baynam; Susan M. Bello; Cornelius F. Boerkoel; Kym M. Boycott; Michael Brudno; Orion J. Buske; et al. (Nucleic Acids Res., 2017)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)