Orion: Scaling Genomic Sequence Matching with Fine-Grained Parallelization. - Kanak Mahadik; Somali Chaterji; Bowen Zhou 008; Milind Kulkarni 001; Saurabh Bagchi (SC, 2014)

An ensemble SVM model for the accurate prediction of non-canonical MicroRNA targets. - Asish Ghoshal; Ananth Grama; Saurabh Bagchi; Somali Chaterji (BCB, 2015)

Interpretable deep neural networks for enhancer prediction. - Seong Gon Kim; Nawanol Theera-Ampornpunt; Ananth Grama; Somali Chaterji (BIBM, 2015)

Fast training on large genomics data using distributed Support Vector Machines. - Nawanol Theera-Ampornpunt; Seong Gon Kim; Asish Ghoshal; Saurabh Bagchi; Ananth Grama; Somali Chaterji (COMSNETS, 2016)

SARVAVID: A Domain Specific Language for Developing Scalable Computational Genomics Applications. - Kanak Mahadik; Christopher Wright; Jinyi Zhang; Milind Kulkarni 001; Saurabh Bagchi; Somali Chaterji (ICS, 2016)

Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions. - Seong Gon Kim; Nawanol Theera-Ampornpunt; Chih-Hao Fang; Mrudul Harwani; Ananth Grama; Somali Chaterji (BMC Syst. Biol., 2016)

The MG-RAST metagenomics database and portal in 2015. - Andreas Wilke; Jared Bischof; Wolfgang Gerlach; Elizabeth M. Glass; Travis Harrison; Kevin P. Keegan; Tobias Paczian; William L. Trimble; Saurabh Bagchi; Ananth Grama; Somali Chaterji; Folker Meyer (Nucleic Acids Res., 2016)

Scalable Genomic Assembly through Parallel de Bruijn Graph Construction for Multiple K-mers. - Kanak Mahadik; Christopher Wright; Milind Kulkarni 001; Saurabh Bagchi; Somali Chaterji (BCB, 2017)

Prediction of enhancer RNA activity levels from ChIP-seq-derived histone modification combinatorial codes. - Nawanol Theera-Ampornpunt; Somali Chaterji (BIBM, 2017)

Suitability of NoSQL systems - Cassandra and ScyllaDB - For IoT workloads. - Ashraf Mahgoub; Sachandhan Ganesh; Folker Meyer; Ananth Grama; Somali Chaterji (COMSNETS, 2017)

Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads. - Ashraf Mahgoub; Paul Wood; Sachandhan Ganesh; Subrata Mitra; Wolfgang Gerlach; Travis Harrison; Folker Meyer; Ananth Grama; Saurabh Bagchi; Somali Chaterji (Middleware, 2017)

TopHat : Topology-Based Host-Level Attribution for Multi-stage Attacks in Enterprise Systems Using Software Defined Networks. - Subramaniyam Kannan; Paul Wood; Larry Deatrick; Patricia Beane; Somali Chaterji; Saurabh Bagchi (SecureComm, 2017)

MAAT: Multi-Stage Attack Attribution in Enterprise Systems using Software Defined Networks. - Subramaniyam Kannan; Paul Wood; Somali Chaterji; Saurabh Bagchi; Larry Deatrick; Patricia Beane (EAI Endorsed Trans. Security Safety, 2017)

Minerva: A reinforcement learning-based technique for optimal scheduling and bottleneck detection in distributed factory operations. - Tara Elizabeth Thomas; Jinkyu Koo; Somali Chaterji; Saurabh Bagchi (COMSNETS, 2018)

ATHENA: Automated Tuning of Genomic Error Correction Algorithms using Language Models. - Mustafa Abdallah; Ashraf Mahgoub; Saurabh Bagchi; Somali Chaterji (CoRR, 2018)

A Distributed Classifier for MicroRNA Target Prediction with Validation Through TCGA Expression Data. - Asish Ghoshal; Jinyi Zhang; Michael A. Roth; Kevin Muyuan Xia; Ananth Y. Grama; Somali Chaterji (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Panel 1 Position Paper: Man versus Machines-Humans Need Not Apply. - Somali Chaterji (COMSNETS, 2019)

Panel 2 Position Paper: AI could Solve the World's Healthcare Problems and that too at Scale! - Somali Chaterji (COMSNETS, 2019)

Panel 3 Position Paper: Blockchain can be the Backbone of India's Economy. - Manish Nagaraj; Somali Chaterji (COMSNETS, 2019)

SOPHIA: Online Reconfiguration of Clustered NoSQL Databases for Time-Varying Workloads. - Ashraf Mahgoub; Paul Wood; Alexander Medoff; Subrata Mitra; Folker Meyer; Somali Chaterji; Saurabh Bagchi (USENIX ATC, 2019)

Federation in genomics pipelines: techniques and challenges. - Somali Chaterji; Jinkyu Koo; Ninghui Li; Folker Meyer; Ananth Grama; Saurabh Bagchi (Briefings Bioinform., 2019)

MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. - Folker Meyer; Saurabh Bagchi; Somali Chaterji; Wolfgang Gerlach; Ananth Grama; Travis Harrison; Tobias Paczian; William L. Trimble; Andreas Wilke (Briefings Bioinform., 2019)

AIKYATAN: mapping distal regulatory elements using convolutional learning on GPU. - Chih-Hao Fang; Nawanol Theera-Ampornpunt; Michael A. Roth; Ananth Grama; Somali Chaterji (BMC Bioinform., 2019)

Grand Challenges of Resilience: Autonomous System Resilience through Design and Runtime Measures. - Saurabh Bagchi; Vaneet Aggarwal; Somali Chaterji; Fred Douglis; Aly El Gamal; Jiawei Han 001; Brian J. Henz; Hank Hoffmann; Suman Jana; Milind Kulkarni 001; Felix Xiaozhu Lin; Karen B. Marais; et al. (CoRR, 2019)

JANUS: Benchmarking Commercial and Open-Source Cloud and Edge Platforms for Object and Anomaly Detection Workloads. - Karthick Shankar; Pengcheng Wang 001; Ran Xu 003; Ashraf Mahgoub; Somali Chaterji (CLOUD, 2020)

ApproxDet: content and contention-aware approximate object detection for mobiles. - Ran Xu 003; Chen-Lin Zhang; Pengcheng Wang 001; Jayoung Lee; Subrata Mitra; Somali Chaterji; Yin Li 003; Saurabh Bagchi (SenSys, 2020)

OPTIMUSCLOUD: Heterogeneous Configuration Optimization for Distributed Databases in the Cloud. - Ashraf Mahgoub; Alexander Medoff; Rakesh Kumar 007; Subrata Mitra; Ana Klimovic; Somali Chaterji; Saurabh Bagchi (USENIX ATC, 2020)

Resilient Cyberphysical Systems and their Application Drivers: A Technology Roadmap. - Somali Chaterji; Parinaz Naghizadeh; Muhammad Ashraful Alam; Saurabh Bagchi; Mung Chiang; David Corman; Brian J. Henz; Suman Jana; Na Li; Shaoshuai Mou; Meeko Oishi; Chunyi Peng 001; et al. (CoRR, 2020)

Artificial Intelligence for Digital Agriculture at Scale: Techniques, Policies, and Challenges. - Somali Chaterji; Nathan DeLay; John Evans; Nathan Mosier; Bernard Engel; Dennis Buckmaster; Ranveer Chandra (CoRR, 2020)

Vision Paper: Grand Challenges in Resilience: Autonomous System Resilience through Design and Runtime Measures. - Saurabh Bagchi; Vaneet Aggarwal; Somali Chaterji; Fred Douglis; Aly El Gamal; Jiawei Han 001; Brian J. Henz; Henry Hoffmann; Suman Jana; Milind Kulkarni 001; Felix Xiaozhu Lin; Karen B. Marais; et al. (IEEE Open J. Comput. Soc., 2020)

Persistent Airborne Surveillance using Semi-Autonomous Drone swarms. - Akhil Bandarupalli; Dhruv Swarup; Noah Weston; Somali Chaterji (DroNet@MobiSys, 2021)

Benchmarking Video Object Detection Systems on Embedded Devices under Resource Contention. - Jayoung Lee; Pengcheng Wang 001; Ran Xu 003; Venkat Dasari 001; Noah Weston; Yin Li 003; Saurabh Bagchi; Somali Chaterji (EMDL@MobiSys, 2021)

SONIC: Application-aware Data Passing for Chained Serverless Applications. - Ashraf Mahgoub; Karthick Shankar; Subrata Mitra; Ana Klimovic; Somali Chaterji; Saurabh Bagchi (USENIX ATC, 2021)

Simultaneous learning of individual microRNA-gene interactions and regulatory comodules. - Michael A. Roth; Pranjal Jain; Jinkyu Koo; Somali Chaterji (BMC Bioinform., 2021)

Ambrosia: Reduction in Data Transfer from Sensor to Server for Increased Lifetime of IoT Sensor Nodes. - Shikhar Suryavansh; Abu Benna; Chris Guest; Somali Chaterji (CoRR, 2021)

Federated Action Recognition on Heterogeneous Embedded Devices. - Pranjal Jain; Shreyas Goenka; Saurabh Bagchi; Biplab Banerjee; Somali Chaterji (CoRR, 2021)

TESSERACT: Gradient Flip Score to Secure Federated Learning Against Model Poisoning Attacks. - Atul Sharma; Wei Chen 124; Joshua C. Zhao; Qiang Qiu 001; Somali Chaterji; Saurabh Bagchi (CoRR, 2021)

ORPHEUS: Living Labs for End-to-End Data Infrastructures for Digital Agriculture. - Pengcheng Wang 001; Edgardo Barsallo Yi; Tomas Ratkus; Somali Chaterji (CoRR, 2021)

Virtuoso: Video-based Intelligence for real-time tuning on SOCs. - Jayoung Lee; Pengcheng Wang 001; Ran Xu 003; Venkat Dasari 001; Noah Weston; Yin Li 003; Saurabh Bagchi; Somali Chaterji (CoRR, 2021)

Hybrid Low-Power Wide-Area Mesh Network for IoT Applications. - Xiaofan Jiang 002; Heng Zhang 016; Edgardo Alberto Barsallo Yi; Nithin Raghunathan; Charilaos Mousoulis; Somali Chaterji; Dimitrios Peroulis; Ali Shakouri; Saurabh Bagchi (IEEE Internet Things J., 2021)

Lattice: A Vision for Machine Learning, Data Engineering, and Policy Considerations for Digital Agriculture at Scale. - Somali Chaterji; Nathan DeLay; John Evans; Nathan Mosier; Bernard Engel; Dennis Buckmaster; Michael Ladisch; Ranveer Chandra (IEEE Open J. Comput. Soc., 2021)

Smartadapt: Multi-branch Object Detection Framework for Videos on Mobiles. - Ran Xu 003; Fangzhou Mu; Jayoung Lee; Preeti Mukherjee; Somali Chaterji; Saurabh Bagchi; Yin Li 003 (CVPR, 2022)

LiteReconfig: cost and content aware reconfiguration of video object detection systems for mobile GPUs. - Ran Xu 003; Jayoung Lee; Pengcheng Wang 001; Saurabh Bagchi; Yin Li 003; Somali Chaterji (EuroSys, 2022)

KRATOS: Context-Aware Cell Type Classification and Interpretation using Joint Dimensionality Reduction and Clustering. - Zihan Zhou 013; Zijia Du; Somali Chaterji (KDD, 2022)

ORION and the Three Rights: Sizing, Bundling, and Prewarming for Serverless DAGs. - Ashraf Mahgoub; Edgardo Barsallo Yi; Karthick Shankar; Sameh Elnikety; Somali Chaterji; Saurabh Bagchi (OSDI, 2022)

Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing. - Atul Sharma; Pranjal Jain; Ashraf Mahgoub; Zihan Zhou 013; Kanak Mahadik; Somali Chaterji (BMC Bioinform., 2022)

WISEFUSE: Workload Characterization and DAG Transformation for Serverless Workflows. - Ashraf Mahgoub; Edgardo Barsallo Yi; Karthick Shankar; Eshaan Minocha; Sameh Elnikety; Saurabh Bagchi; Somali Chaterji (Proc. ACM Meas. Anal. Comput. Syst., 2022)

ApproxNet: Content and Contention-Aware Video Object Classification System for Embedded Clients. - Ran Xu 003; Rakesh Kumar 007; Pengcheng Wang 001; Peter Bai; Ganga Meghanath; Somali Chaterji; Subrata Mitra; Saurabh Bagchi (ACM Trans. Sens. Networks, 2022)

FLAIR: Defense against Model Poisoning Attack in Federated Learning. - Atul Sharma; Wei Chen 124; Joshua C. Zhao; Qiang Qiu 001; Saurabh Bagchi; Somali Chaterji (AsiaCCS, 2023)

Vega: Drone-based Multi-Altitude Target Detection for Autonomous Surveillance. - Akhil Bandarupalli; Sarthak Jain; Akash Melachuri; Joseph Pappas; Somali Chaterji (DCOSS-IoT, 2023)

How to Learn Collaboratively - Federated Learning to Peer-to-Peer Learning and What's at Stake. - Atul Sharma; Joshua C. Zhao; Wei Chen 124; Qiang Qiu 001; Saurabh Bagchi; Somali Chaterji (DSN-S, 2023)

Virtuoso: Energy- and Latency-aware Streamlining of Streaming Videos on Systems-on-Chips. - Jayoung Lee; Pengcheng Wang 001; Ran Xu 003; Sarthak Jain; Venkat Dasari 001; Noah Weston; Yin Li 003; Saurabh Bagchi; Somali Chaterji (ACM Trans. Design Autom. Electr. Syst., 2023)

RECON: Training-Free Acceleration for Text-to-Image Synthesis with Retrieval of Concept Prompt Trajectories. - Chen-Yi Lu; Shubham Agarwal 007; Md. Mehrab Tanjim; Kanak Mahadik; Anup B. Rao; Subrata Mitra; Shiv Kumar Saini; Saurabh Bagchi; Somali Chaterji (ECCV (59), 2024)

SensorBFT: Fault-Tolerant Target Localization Using Voronoi Diagrams and Approximate Agreement. - Akhil Bandarupalli; Adithya Bhat; Somali Chaterji; Michael K. Reiter; Aniket Kate; Saurabh Bagchi (ICDCS, 2024)

Federated Learning Privacy: Attacks, Defenses, Applications, and Policy Landscape - A Survey. - Joshua C. Zhao; Saurabh Bagchi; Salman Avestimehr; Kevin S. Chan; Somali Chaterji; Dimitris Dimitriadis; Jiacheng Li; Ninghui Li; Arash Nourian; Holger R. Roth (CoRR, 2024)

Adapt3D: Lightweight and Adaptive 3D Detection Framework for Mobile GPUs. - Pengcheng Wang 001; Shayok Bagchi; Yin Li 003; Somali Chaterji (COMSNETS, 2025)

Improving Semi-Supervised Semantic Segmentation with Sliced-Wasserstein Feature Alignment and Uniformity. - Chen-Yi Lu; Kasra Derakhshandeh; Somali Chaterji (CVPR, 2025)

SKALD: Learning-Based Shot Assembly for Coherent Multi-Shot Video Creation. - Chen-Yi Lu; Md. Mehrab Tanjim; Ishita Dasgupta 002; Somdeb Sarkhel; Gang Wu 013; Saayan Mitra; Somali Chaterji (CoRR, 2025)

Learning to Inference Adaptively for Multimodal Large Language Models. - Zhuoyan Xu; Khoi Duc Nguyen; Preeti Mukherjee; Saurabh Bagchi; Somali Chaterji; Yingyu Liang; Yin Li 003 (CoRR, 2025)

Hubs and Spokes Learning: Efficient and Scalable Collaborative Machine Learning. - Atul Sharma; Kavindu Herath; Saurabh Bagchi; Chaoyue Liu; Somali Chaterji (CoRR, 2025)

The Federation Strikes Back: A Survey of Federated Learning Privacy Attacks, Defenses, Applications, and Policy Landscape. - Joshua C. Zhao; Saurabh Bagchi; Salman Avestimehr; Kevin S. Chan; Somali Chaterji; Dimitris Dimitriadis; Jiacheng Li; Ninghui Li; Arash Nourian; Holger Roth (ACM Comput. Surv., 2025)