Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. - Song Gao 004; Wing-Kin Sung; Niranjan Nagarajan (J. Comput. Biol., 2011)

FinIS: Improved in silico Finishing Using an Exact Quadratic Programming Formulation. - Song Gao 004; Denis Bertrand; Niranjan Nagarajan (WABI, 2012)