Phylogenetic Analysis of Brine Shrimp (Artemia) in China Using DNA Barcoding. - Weiwei Wang; Qibin Luo; Haiyan Guo; Peter Bossier; Gilbert Van Stappen; Patrick Sorgeloos; Naihong Xin; Qishi Sun; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2008)

A Brief Review on the Mechanisms of miRNA Regulation. - Yimei Cai; Xiaomin Yu; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2009)

How Do Variable Substitution Rates Influence Ka and Ks Calculations? - Dapeng Wang; Song Zhang; Fuhong He; Jiang Zhu; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2009)

Screening and Assessing 11 Mycobacterium tuberculosis Proteins as Potential Serodiagnostical Markers for Discriminating TB Patients from BCG Vaccinees. - Guoqiang Zhang; Lingxia Zhang; Mingcheng Zhang; Linlin Pan; Fengyu Wang; Jun Huang; Guoli Li; Jun Yu 004; Songnian Hu (Genom. Proteom. Bioinform., 2009)

Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans. - Kaifu Chen; Lei Wang; Meng Yang; Jiucheng Liu; Chengqi Xin; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2010)

A Modified Enrichment Method to Construct Microsatellite Library from Plateau Pika Genome (Ochotona curzoniae). - Jianing Geng; Kexin Li; Yanming Zhang; Songnian Hu (Genom. Proteom. Bioinform., 2010)

The Most Redundant Sequences in Human CpG Island Library Are Derived from Mitochondrial Genome. - Ximiao He; Shu Tao; Jing Jin; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2010)

Discovery, Identification and Comparative Analysis of Non-Specific Lipid Transfer Protein (nsLtp) Family in Solanaceae. - Wanfei Liu; Dawei Huang; Kan Liu; Songnian Hu; Jun Yu 004; Gang Gao; Shuhui Song (Genom. Proteom. Bioinform., 2010)

Characterization of Evolutionarily Conserved MicroRNAs in Amphioxus. - Lei Wang; Lan Jiang; Songnian Hu; Yejun Wang (Genom. Proteom. Bioinform., 2010)

wapRNA: a web-based application for the processing of RNA sequences. - Wenming Zhao; Wanfei Liu; Dongmei Tian; Bixia Tang; Yanqing Wang; Caixia Yu; Rujiao Li; Yunchao Ling; Jiayan Wu; Shuhui Song; Songnian Hu (Bioinform., 2011)

EST-Based Identification of Genes Expressed in Skeletal Muscle of the Mandarin Fish (Siniperca chuatsi). - Feng Ding 003; Wuying Chu; Peng Cui 004; Meng Tao; Ruixue Zhou; Falan Zhao; Songnian Hu; Jianshe Zhang (Genom. Proteom. Bioinform., 2011)

BIGpre: A Quality Assessment Package for Next-Generation Sequencing Data. - Tongwu Zhang; Yingfeng Luo; Kan Liu; Linlin Pan; Bing Zhang 007; Jun Yu 004; Songnian Hu (Genom. Proteom. Bioinform., 2011)

Distinct Contributions of Replication and Transcription to Mutation Rate Variation of Human Genomes. - Peng Cui 004; Feng Ding 003; Qiang Lin; Lingfang Zhang; Ang Li; Zhang Zhang 002; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2012)

The Transcript-centric Mutations in Human Genomes. - Peng Cui 004; Qiang Lin; Feng Ding 003; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2012)

The Association Between H3K4me3 and Antisense Transcription. - Peng Cui 004; Wanfei Liu; Yuhui Zhao; Qiang Lin; Feng Ding 003; Chengqi Xin; Jianing Geng; Shuhui Song; Fanglin Sun; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2012)

Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis. - Peng Cui 004; Wanfei Liu; Yuhui Zhao; Qiang Lin; Daoyong Zhang; Feng Ding 003; Chengqi Xin; Zhang Zhang 002; Shuhui Song; Fanglin Sun; Jun Yu 004; Songnian Hu (Genom. Proteom. Bioinform., 2012)

An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells. - Lina Ma; Linghu Nie; Jing Liu; Bing Zhang 007; Shuhui Song; Min Sun; Jin Yang; Yadong Yang; Xiangdong Fang; Songnian Hu; Yongliang Zhao; Jun Yu 004 (Genom. Proteom. Bioinform., 2012)

Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition. - Hao Wu; Hongzhu Qu; Ning Wan; Zhang Zhang 002; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2012)

EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. - Huangkai Zhang; Shenghan Gao; Martin J. Lercher; Songnian Hu; Wei-Hua Chen (Nucleic Acids Res., 2012)

A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse Ovary. - Linlin Pan; Wei Gong; Yuanyuan Zhou; Xiaonuan Li; Jun Yu 004; Songnian Hu (Genom. Proteom. Bioinform., 2014)

Ribogenomics: the Science and Knowledge of RNA. - Jiayan Wu; Jing-Fa Xiao; Zhang Zhang 002; Xumin Wang; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2014)

Characterization of miRNomes in Acute and Chronic Myeloid Leukemia Cell Lines. - Qian Xiong; Yadong Yang; Hai Wang 004; Jie Li; Shaobin Wang; Yanming Li; Yaran Yang; Kan Cai; Xiuyan Ruan; Jiangwei Yan; Songnian Hu; Xiangdong Fang (Genom. Proteom. Bioinform., 2014)

Adolescent Mouse Takes on An Active Transcriptomic Expression During Postnatal Cerebral Development. - Wei Xu; Chengqi Xin; Qiang Lin; Feng Ding 003; Wei Gong; Yuanyuan Zhou; Jun Yu 004; Peng Cui 004; Songnian Hu (Genom. Proteom. Bioinform., 2014)

RiceWiki: a wiki-based database for community curation of rice genes. - Zhang Zhang 002; Jian Sang; Lina Ma; Gang Wu; Hao Wu; Dawei Huang; Dong Zou; Siqi Liu; Ang Li; Lili Hao; Ming Tian; Chao Xu; et al. (Nucleic Acids Res., 2014)

Long Non-coding RNAs and Their Biological Roles in Plants. - Xue Liu; Lili Hao; Dayong Li; Lihuang Zhu; Songnian Hu (Genom. Proteom. Bioinform., 2015)

Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees. - Zilong He; Huangkai Zhang; Shenghan Gao; Martin J. Lercher; Wei-Hua Chen; Songnian Hu (Nucleic Acids Res., 2016)

ISVASE: identification of sequence variant associated with splicing event using RNA-seq data. - Hasan Awad Aljohi; Wanfei Liu; Qiang Lin; Jun Yu 004; Songnian Hu (BMC Bioinform., 2017)

CYP2A6 Polymorphisms Associate with Outcomes of S-1 Plus Oxaliplatin Chemotherapy in Chinese Gastric Cancer Patients. - Lin Yang; Shanshan Zou; Chang Shu; Yan Song; Yongkun Sun; Wen Zhang; Aiping Zhou; Xinghua Yuan; Yi Yang; Songnian Hu (Genom. Proteom. Bioinform., 2017)

RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes. - Wanfei Liu; Shuangyang Wu; Qiang Lin; Shenghan Gao; Feng Ding 009; Xiaowei Zhang; Hasan Awad Aljohi; Jun Yu 004; Songnian Hu (Genom. Proteom. Bioinform., 2018)

Rice Genomics: over the Past Two Decades and into the Future. - Shuhui Song; Dongmei Tian; Zhang Zhang 002; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2018)

REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results. - Shuangyang Wu; Wanfei Liu; Hasan Awad Aljohi; Sarah A. Alromaih; Ibrahim O. Alanazi; Qiang Lin; Jun Yu 004; Songnian Hu (J. Comput. Biol., 2018)

MVP: a microbe-phage interaction database. - Na L. Gao; Chengwei Zhang; Zhanbing Zhang; Songnian Hu; Martin J. Lercher; Xing-Ming Zhao; Peer Bork; Zhi Liu; Wei-Hua Chen (Nucleic Acids Res., 2018)

ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. - Jian Sang; Zhennan Wang; Man Li; Jiabao Cao; Guangyi Niu; Lin Xia; Dong Zou; Fan Wang; Xingjian Xu; Xiaojiao Han; Jinqi Fan; Ye Yang; et al. (Nucleic Acids Res., 2018)

Plant editosome database: a curated database of RNA editosome in plants. - Man Li; Lin Xia; Yuansheng Zhang; Guangyi Niu; Mengwei Li; Pei Wang; Yang Zhang 042; Jian Sang; Dong Zou; Songnian Hu; Lili Hao; Zhang Zhang 002 (Nucleic Acids Res., 2019)

Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human. - Guangyi Niu; Dong Zou; Mengwei Li; Yuansheng Zhang; Jian Sang; Lin Xia; Man Li; Lin Liu; Jiabao Cao; Yang Zhang 042; Pei Wang; Songnian Hu; et al. (Nucleic Acids Res., 2019)

Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees. - Balakrishnan Subramanian; Shenghan Gao; Martin J. Lercher; Songnian Hu; Wei-Hua Chen (Nucleic Acids Res., 2019)

Genome Assembly and Pathway Analysis of Edible Mushroom Agrocybe cylindracea. - Yuan Liang; Dengxue Lu; Sen Wang; Yuhui Zhao; Shenghan Gao; Rongbing Han; Jun Yu 004; Weili Zheng; Jianing Geng; Songnian Hu (Genom. Proteom. Bioinform., 2020)

IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data. - Jian Sang; Dong Zou; Zhennan Wang; Fan Wang; Yuansheng Zhang; Lin Xia; Zhaohua Li; Lina Ma; Mengwei Li; Bingxiang Xu; Xiaonan Liu; Shuangyang Wu; et al. (Genom. Proteom. Bioinform., 2020)

Selection for Cheaper Amino Acids Drives Nucleotide Usage at the Start of Translation in Eukaryotic Genes. - Na L. Gao; Zilong He; Qianhui Zhu; Puzi Jiang; Songnian Hu; Wei-Hua Chen (Genom. Proteom. Bioinform., 2021)

Genome of the Giant Panda Roundworm Illuminates Its Host Shift and Parasitic Adaptation. - Yue Xie; Sen Wang; Shuangyang Wu; Shenghan Gao; Qingshu Meng; Chengdong Wang; Jingchao Lan; Li Luo; Xuan Zhou; Jing Xu; Xiaobin Gu; Ran He 004; et al. (Genom. Proteom. Bioinform., 2022)

VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes. - Qinglan Sun; Chang Shu; Wenyu Shi; Yingfeng Luo; Guomei Fan; Jingyi Nie; Yuhai Bi; Qihui Wang; Jianxun Qi; Jian Lu; Yuanchun Zhou; Zhihong Shen; et al. (Nucleic Acids Res., 2022)

Toward a New Paradigm of Genomics Research - Celebration of the 20th Anniversary of Beijing Institute of Genomics. - Zhang Zhang 002; Songnian Hu; Jun Yu 004 (Genom. Proteom. Bioinform., 2023)

Global Marine Cold Seep Metagenomes Reveal Diversity of Taxonomy, Metabolic Function, and Natural Products. - Tao Yu; Yingfeng Luo; Xinyu Tan; Dahe Zhao; Xiaochun Bi; Chenji Li; Yanning Zheng; Hua Xiang; Songnian Hu (Genom. Proteom. Bioinform., 2024)