A framework for the development of Biomedical Text Mining software tools. - Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (BIBE, 2008)

A framework for the integrated analysis of metabolic and regulatory networks. - Rui Mendes 001; Anália Lourenço; Sónia Carneiro; Miguel Rocha 001; Isabel Rocha; Eugénio C. Ferreira (BIBE, 2008)

Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. - José P. Pinto; Oscar Dias; Anália Lourenço; Sónia Carneiro; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (IWPACBB, 2008)

Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. - Anália Lourenço; Sónia Carneiro; Eugénio C. Ferreira; Rafael Carreira; Luis M. Rocha; Daniel Glez-Peña; José Ramón Méndez 001; Florentino Fdez-Riverola; Fernando Díaz 001; Isabel Rocha; Miguel Rocha 001 (IWANN (2), 2009)

@Note: A workbench for Biomedical Text Mining. - Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola; Eugénio C. Ferreira; Isabel Rocha; Miguel Rocha 001 (J. Biomed. Informatics, 2009)

Applying a Metabolic Footprinting Approach to Characterize the Impact of the Recombinant Protein Production in Escherichia coli. - Sónia Carneiro; Silas Granato Villas-Bôas; Isabel Rocha; Eugénio C. Ferreira (IWPACBB, 2010)

BioDR: Semantic indexing networks for biomedical document retrieval. - Anália Lourenço; Rafael Carreira; Daniel Glez-Peña; José Ramón Méndez 001; Sónia Carneiro; Luis Mateus Rocha; Fernando Díaz 001; Eugénio C. Ferreira; Isabel Rocha; Florentino Fdez-Riverola; Miguel Rocha 001 (Expert Syst. Appl., 2010)

A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant E. coli Systems. - Sónia Carneiro; Eugénio C. Ferreira; Isabel Rocha (PACBB, 2011)

Interpreting the Regulatory Interplay in E. coli Metabolic Pathways. - Anália Lourenço; Sónia Carneiro; José P. Pinto; Miguel Rocha 001; Eugénio C. Ferreira; Isabel Rocha (PACBB, 2011)

Challenges in integrating Escherichia coli molecular biology data. - Anália Lourenço; Sónia Carneiro; Miguel Rocha 001; Eugénio C. Ferreira; Isabel Rocha (Briefings Bioinform., 2011)

Semantic annotation of biological concepts interplaying microbial cellular responses. - Rafael Carreira; Sónia Carneiro; Rui Pereira; Miguel Rocha 001; Isabel Rocha; Eugénio C. Ferreira; Anália Lourenço (BMC Bioinform., 2011)

A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways. - Anália Lourenço; Sónia Carneiro; José P. Pinto; Miguel Rocha 001; Eugénio C. Ferreira; Isabel Rocha (J. Integr. Bioinform., 2011)

Reconstructing transcriptional Regulatory Networks using data integration and Text Mining. - Rafael T. Pereira; Hugo Costa; Sónia Carneiro; Miguel Rocha 001; Rui Mendes 001 (BIBM, 2015)

Reconstruction of a genome-scale metabolic model for Actinobacillus succinogenes 130Z. - Bruno Pereira; Joana Miguel; Paulo Vilaça; Simão Soares; Isabel Rocha; Sónia Carneiro (BMC Syst. Biol., 2018)