rHVDM - a fast and user-friendly R package to predict transcription factor targets from microarray time series data. - Martino Barenco; Sonia H. Shah; Daniel Brewer; Robin Callard; Jaroslav Stark; Crispin J. Miller; Michael Hubank (BMC Syst. Biol., 2007)

rHVDM: an R package to predict the activity and targets of a transcription factor. - Martino Barenco; E. Papouli; Sonia H. Shah; Daniel Brewer; Crispin J. Miller; Michael Hubank (Bioinform., 2009)

Identifying differential exon splicing using linear models and correlation coefficients. - Sonia H. Shah; Jacqueline A. Pallas (BMC Bioinform., 2009)