Computing Annotated Logic Programs. - Sonia M. Leach; James J. Lu (ICLP, 1994)

Query Processing in Annotated Logic Programming: Theory and Implementation. - Sonia M. Leach; James J. Lu (J. Intell. Inf. Syst., 1996)

Model Reduction Techniques for Computing Approximately Optimal Solutions for Markov Decision Processes. - Thomas L. Dean; Robert Givan; Sonia M. Leach (UAI, 1997)

Omega-Resolution: An Inference Rule for Regular Multiple-Valued Logics. - Sonia M. Leach; James J. Lu; Neil V. Murray; Erik Rosenthal (JELIA, 1998)

Comparison of Clustering Metrics and Unsupervised Learning Algorithms on Genome-Wide Gene Expression Level Data. - Sonia M. Leach; Lawrence Hunter; David Landsman (AAAI/IAAI, 1999)

Bounded-parameter Markov decision processes. - Robert Givan; Sonia M. Leach; Thomas L. Dean (Artif. Intell., 2000)

GEST: a gene expression search tool based on a novel Bayesian similarity metric. - Lawrence Hunter; Ronald C. Taylor; Sonia M. Leach; Richard Simon (ISMB (Supplement of Bioinformatics), 2001)

℧-resolution and hybrid knowledge bases. - Sonia M. Leach; James J. Lu; Neil V. Murray; Erik Rosenthal (J. Frankl. Inst., 2001)

Predicting the Subcellular Localization of Human Proteins Using Machine Learning and Exploratory Data Analysis. - George K. Acquaah-Mensah; Sonia M. Leach; Chittibabu Guda (Genom. Proteom. Bioinform., 2006)

Informed Structural Priors for Bayesian Networks: Applications in Molecular Biology Using Heterogeneous Data Sources. - Sonia M. Leach (2006)

Assessing and Combining Reliability of Protein Interaction Sources. - Sonia M. Leach; Aaron Gabow; Lawrence Hunter; Debra Goldberg (Pacific Symposium on Biocomputing, 2007)

Improving protein function prediction methods with integrated literature data. - Aaron Gabow; Sonia M. Leach; William A. Baumgartner Jr.; Lawrence Hunter; Debra Goldberg (BMC Bioinform., 2008)

Predicting protein linkages in bacteria: Which method is best depends on task. - Anis Karimpour-Fard; Sonia M. Leach; Ryan T. Gill; Lawrence Hunter (BMC Bioinform., 2008)

Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology. - Hannah J. Tipney; Sonia M. Leach; Weiguo Feng; Richard A. Spritz; Trevor Williams; Lawrence Hunter (BMC Bioinform., 2009)

Biomedical Discovery Acceleration, with Applications to Craniofacial Development. - Sonia M. Leach; Hannah J. Tipney; Weiguo Feng; William A. Baumgartner Jr.; Priyanka Kasliwal; Ronald P. Schuyler; Trevor Williams; Richard A. Spritz; Lawrence Hunter (PLoS Comput. Biol., 2009)

Bioinformatics-driven discovery of rational combination for overcoming EGFR-mutant lung cancer resistance to EGFR therapy. - Jihye Kim 004; Vihas T. Vasu; Rangnath Mishra; Katherine R. Singleton; Minjae Yoo; Sonia M. Leach; Eveline Farias-Hesson; Robert J. Mason; Jaewoo Kang; Preveen Ramamoorthy; Jeffrey A. Kern; Lynn E. Heasley; et al. (Bioinform., 2014)

Creating an ignorance-base: Exploring known unknowns in the scientific literature. - Mayla R. Boguslav; Nourah M. Salem; Elizabeth K. White; Katherine J. Sullivan; Michael Bada; Teri L. Hernandez; Sonia M. Leach; Lawrence E. Hunter (J. Biomed. Informatics, 2023)