Pyicos: A Flexible Tool Library for Analyzing Protein-Nucleotide Interactions with Mapped Reads from Deep Sequencing. - Juan González-Vallinas; Sonja Althammer; Eduardo Eyras (JBI, 2010)

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data. - Sonja Althammer; Juan González-Vallinas; Cecilia Ballaré; Miguel Beato; Eduardo Eyras (Bioinform., 2011)

Elucidating mechanisms of gene regulation. Integration of high-throughput sequencing data for studying the epigenome. - Sonja Althammer (2012)