PRAQA: Protein Relative Abundance Quantification Algorithm for 3D Fluorescent Images. - Corrado Ameli; Sonja Fixemer; David S. Bouvier; Alexander Skupin (BIOIMAGING, 2021)

PaFSe: A Parameter-Free Segmentation Approach for 3D Fluorescent Images. - Corrado Ameli; Sonja Fixemer; David S. Bouvier; Alexander Skupin (SN Comput. Sci., 2022)

Mechanistic multiscale modelling of energy metabolism in human astrocytes reveals the impact of morphology changes in Alzheimer's Disease. - Sofia Farina; Valérie Voorsluijs; Sonja Fixemer; David S. Bouvier; Susanne Claus; Mark H. Ellisman; Stéphane P. A. Bordas; Alexander Skupin (PLoS Comput. Biol., 2023)