LC-GAP: Localized Coulomb Descriptors for the Gaussian Approximation Potential. - James Barker; Johannes Bulin; Jan Hamaekers; Sonja Mathias (Scientific Computing and Algorithms in Industrial Simulations, 2017)

CBMOS: a GPU-enabled Python framework for the numerical study of center-based models. - Sonja Mathias; Adrien Coulier; Andreas Hellander (BMC Bioinform., 2022)

Adaptive time integration of mechanical forces in center-based models for biological cell populations. - Per Lötstedt; Sonja Mathias (CoRR, 2022)

Contributions of cell behavior to geometric order in embryonic cartilage. - Sonja Mathias; Igor Adameyko; Andreas Hellander; Jochen Kursawe (PLoS Comput. Biol., 2023)

Numerical integration of mechanical forces in center-based models for biological cell populations. - Per Lötstedt; Sonja Mathias (Appl. Math. Comput., 2025)