Solving traveling salesman problems using molecular programming. - Soo-Yong Shin; Byoung-Tak Zhang; Sung-Soo Jun (CEC, 1999)

Bayesian Evolutionary Optimization Using Helmholtz Machines. - Byoung-Tak Zhang; Soo-Yong Shin (PPSN, 2000)

Bayesian evolutionary algorithms for continuous function optimization. - Soo-Yong Shin; Byoung-Tak Zhang (CEC, 2001)

Evolutionary sequence generation for reliable DNA computing. - Soo-Yong Shin; Dongmin Kim; In-Hee Lee 001; Byoung-Tak Zhang (IEEE Congress on Evolutionary Computation, 2002)

NACST/Seq: A Sequence Design System with Multiobjective Optimization. - Dongmin Kim; Soo-Yong Shin; In-Hee Lee 001; Byoung-Tak Zhang (DNA, 2002)

Temperature Gradient-Based DNA Computing for Graph Problems with Weighted Edges. - Ji Youn Lee; Soo-Yong Shin; Sirk June Augh; Tai Hyun Park; Byoung-Tak Zhang (DNA, 2002)

DNA sequence optimization using constrained multi-objective evolutionary algorithm. - In-Hee Lee 001; Soo-Yong Shin; Byoung-Tak Zhang (IEEE Congress on Evolutionary Computation, 2003)

Development, evaluation and benchmarking of simulation software for biomolecule-based computing. - Derrel Blain; Max H. Garzon; Soo-Yong Shin; Byoung-Tak Zhang; Satoshi Kashiwamura; Masahito Yamamoto; Atsushi Kameda; Azuma Ohuchi (Nat. Comput., 2004)

Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing. - Soo-Yong Shin; In-Hee Lee 001; Dongmin Kim; Byoung-Tak Zhang (IEEE Trans. Evol. Comput., 2005)

Microarray Probe Design Using epsilon-Multi-Objective Evolutionary Algorithms with Thermodynamic Criteria. - Soo-Yong Shin; In-Hee Lee 001; Byoung-Tak Zhang (EvoWorkshops, 2006)

Multiplex PCR Assay Design by Hybrid Multiobjective Evolutionary Algorithm. - In-Hee Lee 001; Soo-Yong Shin; Byoung-Tak Zhang (EMO, 2007)

PIE: an online prediction system for protein-protein interactions from text. - Sun Kim; Soo-Yong Shin; In-Hee Lee 001; Soo-Jin Kim; Ram Sriram; Byoung-Tak Zhang (Nucleic Acids Res., 2008)

EvoOligo: Oligonucleotide Probe Design With Multiobjective Evolutionary Algorithms. - Soo-Yong Shin; In-Hee Lee 001; Young-Min Cho; Kyung-Ae Yang; Byoung-Tak Zhang (IEEE Trans. Syst. Man Cybern. Part B, 2009)

Case Study: Analysis of End-User Requests on Electronic Medical Record and Computerized Physician Order Entry System of Seoul National University Hospital in Korea. - Young-Ah Kim; Soo-Yong Shin; Eun-Mi Jo; Chan-Hee Park; Min-A. Hwang; Kyung Hwan Kim; Chun Kee Chung (MedInfo, 2010)

TRIP Database: a manually curated database of protein-protein interactions for mammalian TRP channels. - Young-Cheul Shin; Soo-Yong Shin; Insuk So; Dongseop Kwon; Ju-Hong Jeon (Nucleic Acids Res., 2011)

PIE the search: searching PubMed literature for protein interaction information. - Sun Kim; Dongseop Kwon; Soo-Yong Shin; W. John Wilbur (Bioinform., 2012)

A probabilistic coevolutionary biclustering algorithm for discovering coherent patterns in gene expression dataset. - Je-Gun Joung; Soo-Jin Kim; Soo-Yong Shin; Byoung-Tak Zhang (BMC Bioinform., 2012)

CFMDS: CUDA-based fast multidimensional scaling for genome-scale data. - Sungin Park; Soo-Yong Shin; Kyu-Baek Hwang (BMC Bioinform., 2012)

A comprehensive manually curated protein-protein interaction database for the Death Domain superfamily. - Dongseop Kwon; Jong Hwan Yoon; Soo-Yong Shin; Tae-Ho Jang; Hong-Gee Kim; Insuk So; Ju-Hong Jeon; Hyun Ho Park (Nucleic Acids Res., 2012)

De-Identification Method for Bilingual EMR Free Texts. - Soo-Yong Shin; Yongdon Shin; Hyo Joung Choi; Jihyun Park; Yongman Lyu; Woo-Sung Kim; Jae Ho Lee (AMIA, 2013)

Experience of De-identification System Development for Clinical Research in Tertiary Hospital. - Soo-Yong Shin; Yongman Lyu; Yongdon Shin; Hyo Joung Choi; Jihyun Park; Woo-Sung Kim; Jae Ho Lee (MedInfo, 2013)

Assisting manual literature curation for protein-protein interactions using BioQRator. - Dongseop Kwon; Sun Kim; Soo-Yong Shin; Andrew Chatr-aryamontri; W. John Wilbur (Database J. Biol. Databases Curation, 2014)

Validation for Accuracy of Cancer Diagnosis in Electronic Medical Records Using a Text Mining Method. - Yura Lee; Soo-Yong Shin; Sung-Min Ahn; Jae Ho Lee; Woo-Sung Kim (MedInfo, 2015)

First Step to Big Data Research in Hospital. - Yongdon Shin; Changmin Choi; Jae Ho Lee; Soo-Yong Shin (MedInfo, 2015)

Smartphone Applications with Sensors Used in a Tertiary Hospital - Current Status and Future Challenges. - Yu Rang Park; Yura Lee; Guna Lee; Jae Ho Lee; Soo-Yong Shin (Sensors, 2015)

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. - Sun Kim; Rezarta Islamaj Dogan; Andrew Chatr-aryamontri; Christie S. Chang; Rose Oughtred; Jennifer M. Rust; Riza Batista-Navarro; Jacob Carter; Sophia Ananiadou; Sérgio Matos; André Santos; David Campos 001; et al. (Database J. Biol. Databases Curation, 2016)

Establishment of Kawasaki disease database based on metadata standard. - Yu Rang Park; Jae-Jung Kim; Young Jo Yoon; Young-Kwang Yoon; Ha Yeong Koo; Young Mi Hong; Gi Young Jang; Soo-Yong Shin; Jong-Keuk Lee (Database J. Biol. Databases Curation, 2016)

BioC viewer: a web-based tool for displaying and merging annotations in BioC. - Soo-Yong Shin; Sun Kim; W. John Wilbur; Dongseop Kwon (Database J. Biol. Databases Curation, 2016)

PEATH: single-individual haplotyping by a probabilistic evolutionary algorithm with toggling. - Joong Chae Na; Jongchan Lee; Je-Keun Rhee; Soo-Yong Shin (Bioinform., 2018)

Hierarchical topic modeling with pose-transition feature for action recognition using 3D skeleton data. - Thien Huynh-The; Cam-Hao Hua; Nguyen Anh Tu; Tae Ho Hur; Jae Hun Bang; Dohyeong Kim; Muhammad Bilal Amin; Byeong Ho Kang 001; Hyonwoo Seung; Soo-Yong Shin; Eun-Soo Kim; Sungyoung Lee 001 (Inf. Sci., 2018)

Comparison of Data Entry Time for Structured Data Entries and Free Text. - Ji Eun Hwang; Byung-Ook Seong; Sang-Oh Lee; Soo-Yong Shin (AMIA, 2019)

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. - Paolo Romano 001; Arnaud Céol; Andreas Dräger; Antonino Fiannaca; Rosalba Giugno; Massimo La Rosa; Luciano Milanesi; Ulrich Pfeffer; Riccardo Rizzo; Soo-Yong Shin; Junfeng Xia; Alfonso Urso (BMC Bioinform., 2019)

Fast single individual haplotyping method using GPGPU. - Joong Chae Na; Inbok Lee; Je-Keun Rhee; Soo-Yong Shin (Comput. Biol. Medicine, 2019)

Reliability and Performance Assessment of Federated Learning on Clinical Benchmark Data. - GeunHyeong Lee; Soo-Yong Shin (CoRR, 2020)

Underwater Internet of Things -Network and Device Management for Mobile Underwater Acoustic Sensor Networks. - Delphin Raj Kesari Mary; Eunbi Ko; Soo-Yong Shin; Seung-Geun Kim; Soo-Hyun Park (WUWNet, 2021)

Influenza Screening Using Patient-Generated Health Data in Post COVID-19 Pandemic. - Hyunwoo Choo; Myeongchan Kim; Dohyung Lee; Soo-Yong Shin (MIE, 2022)

Symptom-Based COVID19 Screening Model Combined with Surveillance Information. - Dohyung Lee; Myeongchan Kim; Hyunwoo Choo; Soo-Yong Shin (MIE, 2022)

Development and Validation of Digital Health Technology Literacy Assessment Questionnaire. - Junghee Yoon; Mangyeong Lee; Jin Seok Ahn; Dongryul Oh; Soo-Yong Shin; Yoon Jung Chang; Juhee Cho (J. Medical Syst., 2022)

Traffic Exposure and Breast Cancer Mortality by Area of Residence: Incorporating Clinical and Socioeconomic Data. - Hyo Jung Kim; Sangyong Cho; Soo-Yong Shin; Se Kyung Lee; Haeyoung Kim; Sumeeta Srinivasan; S. V. Subramanian; Yeon-Hee Park (MedInfo, 2023)

Current Status of SNOMED CT National Extensions and Terminology Managements. - Seeun Kim; Soo-Yong Shin; Ji Eun Hwang; Hyeoun-Ae Park (MedInfo, 2023)

Deep-learning-based personalized prediction of absolute neutrophil count recovery and comparison with clinicians for validation. - Hyunwoo Choo; Suyoung Yoo; Suhyeon Moon; Minsu Park; Jiwon Lee; Ki Woong Sung; Won Chul Cha; Soo-Yong Shin; Meong Hi Son (J. Biomed. Informatics, 2023)

The potential for drug incompatibility and its drivers - A hospital wide retrospective descriptive study. - Nahyun Keum; Junsang Yoo; Sujeong Hur; Soo-Yong Shin; Patricia C. Dykes; Min-Jeoung Kang; Yong Seok Lee; Won Chul Cha (Int. J. Medical Informatics, 2024)

Temporal Dynamic Embedding for Irregularly Sampled Time Series. - Mincheol Kim; Soo-Yong Shin (CoRR, 2025)