GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research. - Sook Jung; Christopher Jesudurai; Margaret Staton; Zhidian Du; Stephen P. Ficklin; Ilhyung Cho; Albert G. Abbott; Jeffrey Tomkins; Dorrie Main (BMC Bioinform., 2004)

GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. - Sook Jung; Margaret Staton; Taein Lee; Anna Blenda; Randall Svancara; Albert G. Abbott; Dorrie Main (Nucleic Acids Res., 2008)

GenSAS - An online integrated genome sequence annotation pipeline. - Taein Lee; Cameron Peace; Sook Jung; Ping Zheng; Dorrie Main; Ilhyung Cho (BMEI, 2011)

Tripal: a construction toolkit for online genome databases. - Stephen P. Ficklin; Lacey-Anne Sanderson; Chun-Huai Cheng; Margaret Staton; Taein Lee; Ilhyung Cho; Sook Jung; Kirstin E. Bett; Doreen Main (Database J. Biol. Databases Curation, 2011)

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. - Sook Jung; Naama Menda; Seth Redmond; Robert M. Buels; Maren Friesen; Yuri R. Bendaña; Lacey-Anne Sanderson; Hilmar Lapp; Taein Lee; Bob MacCallum; Kirstin E. Bett; Scott Cain; et al. (Database J. Biol. Databases Curation, 2011)

Addition of a breeding database in the Genome Database for Rosaceae. - Kate Evans; Sook Jung; Taein Lee; Lisa Brutcher; Ilhyung Cho; Cameron Peace; Dorrie Main (Database J. Biol. Databases Curation, 2013)

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases. - Lacey-Anne Sanderson; Stephen P. Ficklin; Chun-Huai Cheng; Sook Jung; F. Alex Feltus; Kirstin E. Bett; Dorrie Main (Database J. Biol. Databases Curation, 2013)

The Genome Database for Rosaceae (GDR): year 10 update. - Sook Jung; Stephen P. Ficklin; Taein Lee; Chun-Huai Cheng; Anna Blenda; Ping Zheng; Jing Yu 002; Aureliano Bombarely; Ilhyung Cho; Sushan Ru; Kate Evans; Cameron Peace; et al. (Nucleic Acids Res., 2014)

CottonGen: a genomics, genetics and breeding database for cotton research. - Jing Yu 002; Sook Jung; Chun-Huai Cheng; Stephen P. Ficklin; Taein Lee; Ping Zheng; Don Jones; Richard G. Percy; Dorrie Main (Nucleic Acids Res., 2014)

Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. - Sook Jung; Taein Lee; Stephen P. Ficklin; Jing Yu 002; Chun-Huai Cheng; Dorrie Main (Database J. Biol. Databases Curation, 2016)

Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. - Sook Jung; Taein Lee; Chun-Huai Cheng; Stephen P. Ficklin; Jing Yu 002; Jodi L. Humann; Dorrie Main (Database J. Biol. Databases Curation, 2017)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

Association Mapping for Forest Trees with CartograTree. - Nic Herndon; Taylor Falk; Emily S. Grau; Sook Jung; Stephen P. Ficklin; Dorrie Main; Margaret E. Staton; Jill L. Wegrzyn (Application of Semantic Technology in Biodiversity Science, 2018)

Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. - Katheryn Buble; Sook Jung; Jodi L. Humann; Jing Yu 002; Chun-Huai Cheng; Taein Lee; Stephen P. Ficklin; Heidi Hough; Bradford Condon; Margaret E. Staton; Jill L. Wegrzyn; Dorrie Main (Database J. Biol. Databases Curation, 2019)

Growing and cultivating the forest genomics database, TreeGenes. - Taylor Falk; Nic Herndon; Emily S. Grau; Sean Buehler; Peter Richter 001; Sumaira Zaman; Eliza M. Baker; Risharde Ramnath; Stephen P. Ficklin; Margaret Staton; Frank Alex Feltus; Sook Jung; et al. (Database J. Biol. Databases Curation, 2019)

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. - Shawna Spoor; Chun-Huai Cheng; Lacey-Anne Sanderson; Bradford Condon; Abdullah Almsaeed; Ming Chen; Anthony Bretaudeau; Helena Rasche; Sook Jung; Dorrie Main; Kirstin E. Bett; Margaret Staton; et al. (Database J. Biol. Databases Curation, 2019)

15 years of GDR: New data and functionality in the Genome Database for Rosaceae. - Sook Jung; Taein Lee; Chun-Huai Cheng; Katheryn Buble; Ping Zheng; Jing Yu 002; Jodi L. Humann; Stephen P. Ficklin; Ksenija Gasic; Kristin Scott; Morgan Frank; Sushan Ru; et al. (Nucleic Acids Res., 2019)

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. - Shawna Spoor; Connor Wytko; Brian Soto; Ming Chen; Abdullah Almsaeed; Bradford Condon; Nic Herndon; Heidi Hough; Sook Jung; Meg Staton; Jill L. Wegrzyn; Dorrie Main; et al. (Database J. Biol. Databases Curation, 2020)

Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. - Margaret Staton; Ethalinda Cannon; Lacey-Anne Sanderson; Jill L. Wegrzyn; Tavis K. Anderson; Sean Buehler; Irene Cobo-Simón; Kay Faaberg; Emily S. Grau; Valentin Guignon; Jessica Gunoskey; Blake Inderski; et al. (Briefings Bioinform., 2021)

Tripal MegaSearch: a tool for interactive and customizable query and download of big data. - Sook Jung; Chun-Huai Cheng; Katheryn Buble; Taein Lee; Jodi L. Humann; Jing Yu 002; James Crabb; Heidi Hough; Dorrie Main (Database J. Biol. Databases Curation, 2021)

The Breeding Information Management System (BIMS): an online resource for crop breeding. - Sook Jung; Taein Lee; Ksenija Gasic; B. Todd Campbell; Jing Yu 002; Jodi L. Humann; Sushan Ru; Daniel Edge-Garza; Heidi Hough; Dorrie Main (Database J. Biol. Databases Curation, 2021)

Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences. - Cecilia H. Deng; Sushma Naithani; Sunita Kumari; Irene Cobo-Simón; Elsa H. Quezada-Rodríguez; Mária Skrabisová; Nick Gladman; Melanie J. Correll; Akeem Babatunde Sikiru; Olusola O. Afuwape; Annarita Marrano; Ines Rebollo; et al. (Database J. Biol. Databases Curation, 2023)

Building resource-efficient community databases using open-source software. - Sook Jung; Chun-Huai Cheng; Taein Lee; Katheryn Buble; Jodi L. Humann; Ping Zheng; Jing Yu 002; Dorrie Main (Database J. Biol. Databases Curation, 2025)