An enhanced Markov clustering method for detecting protein complexes. - Charalampos N. Moschopoulos; Georgios A. Pavlopoulos; Spiridon D. Likothanassis; Sofia Kossida (BIBE, 2008)

GOmir: A stand-alone application for human microRNA target analysis and gene ontology clustering. - Pantelis Zotos; Georgios Papachristoudis; Maria G. Roubelakis; Ioannis Michalopoulos; Kalliopi I. Pappa; Nicholas P. Anagnou; Sophia Kossida (BIBE, 2008)

Identification and analysis of mammalian KLK6 orthologue genes for prediction of physiological substrates. - Georgios Pampalakis; Maria Arampatzidou; Grigoris D. Amoutzias; Sofia Kossida; Georgia Sotiropoulou (Comput. Biol. Chem., 2008)

A Biosignal Classification Neural Modeling Methodology for Intelligent Hardware Construction. - Anastasia N. Kastania; Stelios Zimeras; Sophia Kossida (New Directions in Intelligent Interactive Multimedia, 2008)

jClust: a clustering and visualization toolbox. - Georgios A. Pavlopoulos; Charalampos N. Moschopoulos; Sean D. Hooper; Reinhard Schneider 002; Sophia Kossida (Bioinform., 2009)

The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community. - Domenica D'Elia; Andreas Gisel; Nils-Einar Eriksson; Sophia Kossida; Kimmo Mattila; Lubos Klucar; Erik Bongcam-Rudloff (BMC Bioinform., 2009)

GIBA: a clustering tool for detecting protein complexes. - Charalampos N. Moschopoulos; Georgios A. Pavlopoulos; Reinhard Schneider 002; Spiridon D. Likothanassis; Sophia Kossida (BMC Bioinform., 2009)

Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application. - Maria G. Roubelakis; Pantelis Zotos; Georgios Papachristoudis; Ioannis Michalopoulos; Kalliopi I. Pappa; Nicholas P. Anagnou; Sophia Kossida (BMC Bioinform., 2009)

'Brukin2D': a 2D visualization and comparison tool for LC-MS data. - Dimosthenis Tsagkrasoulis; Panagiotis Zerefos; George Loudos; Antonia Vlahou; Marc Baumann; Sophia Kossida (BMC Bioinform., 2009)

Proteomic Feature Maps: A new visualization approach in proteomics analysis. - Eugenia G. Giannopoulou; Spiros D. Garbis; Antonia Vlahou; Sofia Kossida; George Lepouras; Elias S. Manolakos (J. Biomed. Informatics, 2009)

A Spot Segmentation Approach for 2D Gel Electrophoresis Images Based on 2D Histograms. - Eleni Zacharia; Eirini Kostopoulou; Dimitris Maroulis; Sophia Kossida (ICPR, 2010)

e-Herophilus: 24-hour personalised telecardiology services. - Anastasia N. Kastania; George Loudos; Nicholas P. Sgouros; Ioannis Constantinou; Maria Vavatsioula; Harisios Boudoulas; Sophia Kossida (Int. J. Electron. Heal., 2010)

Development and Evaluation of a Web-Based Personal Electronic Health Record (pEHR). - Vasileios G. Stamatopoulos; George E. Karagiannis; Michael L. Rigby; Sophia Kossida (Web-Based Applications in Healthcare and Biomedicine, 2010)

Optimizing Filter Processes on Protein Interaction Clustering Results Using Genetic Algorithms. - Charalampos N. Moschopoulos; Grigorios N. Beligiannis; Sophia Kossida; Spiridon D. Likothanassis (EANN, 2011)

Using graph theory to analyze biological networks. - Georgios A. Pavlopoulos; Maria Secrier; Charalampos N. Moschopoulos; Theodoros G. Soldatos; Sophia Kossida; Jan Aerts; Reinhard Schneider 002; Pantelis G. Bagos (BioData Min., 2011)

Compositional perspectives on human brain aging. - Stilianos Arhondakis; Sophia Kossida (Biosyst., 2011)

Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme. - George D. Kritikos; Charalampos N. Moschopoulos; Michalis Vazirgiannis; Sophia Kossida (BMC Bioinform., 2011)

A Computer-Based Technique for Automated Spot Detection in Proteomics Images. - Eleftheria A. Mylona; Michalis A. Savelonas; Dimitris Maroulis; Sophia Kossida (IEEE Trans. Inf. Technol. Biomed., 2011)

Data Mining Based Collaborative Analysis of Microarray Data. - Georgia Tsiliki; Sophia Kossida; Natalja Friesen; Stefan Rüping 001; Manolis Tzagarakis; Nikos I. Karacapilidis (ICTAI, 2012)

Gappi: Identifying Important protein Modules through protein-protein Interaction Graphs. - Charalampos N. Moschopoulos; Marios Fytros; Stamatis Alatsathianos; Spiridon D. Likothanassis; Sophia Kossida (Int. J. Artif. Intell. Tools, 2012)

3D Molecular Modelling of the Helicase Enzyme of the Endemic, Zoonotic Greek Goat Encephalitis Virus. - Dimitrios Vlachakis; Georgia Tsiliki; Sophia Kossida (EANN (1), 2013)

State-of-the-art technology in modern computer-aided drug design. - Georgios A. Dalkas; Dimitrios Vlachakis; Dimosthenis Tsagkrasoulis; Anastasia N. Kastania; Sophia Kossida (Briefings Bioinform., 2013)

Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit. - Dimitrios Vlachakis; Dimosthenis Tsagkrasoulis; Vasileios Megalooikonomou; Sophia Kossida (Bioinform., 2013)

Antibody Drug Conjugate Bioinformatics: Drug Delivery through the Letterbox. - Dimitrios Vlachakis; Sophia Kossida (Comput. Math. Methods Medicine, 2013)

Space Constrained Homology Modelling: The Paradigm of the RNA-Dependent RNA Polymerase of Dengue (Type II) Virus. - Dimitrios Vlachakis; Dimitrios-Georgios Kontopoulos; Sophia Kossida (Comput. Math. Methods Medicine, 2013)

ASSP; the Antibody Secondary Structure Profile search tool. - Dimitrios Vlachakis; Alexandros Armaos; Ioannis Kasampalidis; Arianna Filntisi; Sophia Kossida (ICABD, 2014)

A Data Mining Based Approach for Collaborative Analysis of Biomedical Data. - Georgia Tsiliki; Sophia Kossida; Natalja Friesen; Stefan Rüping 001; Manolis Tzagarakis; Nikos I. Karacapilidis (Int. J. Artif. Intell. Tools, 2014)

Evolution of the F0F1 ATP Synthase Complex in Light of the Patchy Distribution of Different Bioenergetic Pathways across Prokaryotes. - Vassiliki Lila Koumandou; Sophia Kossida (PLoS Comput. Biol., 2014)

IMGT®, the international ImMunoGeneTics information system® 25 years on. - Marie-Paule Lefranc; Véronique Giudicelli; Patrice Duroux; Joumana Jabado-Michaloud; Géraldine Folch; Safa Aouinti; Emilie Carillon; Hugo Duvergey; Amélie Houles; Typhaine Paysan-Lafosse; Saida Hadi-Saljoqi; Souphatta Sasorith; et al. (Nucleic Acids Res., 2015)

Advanced Protein Alignments Based on Sequence, Structure and Hydropathy Profiles; The Paradigm of the Viral Polymerase Enzyme. - Dimitrios Vlachakis; Alexandros Armaos; Sophia Kossida (Math. Comput. Sci., 2017)

IMGT-KG: A Knowledge Graph for Immunogenetics. - Gaoussou Sanou; Véronique Giudicelli; Nika Abdollahi; Sofia Kossida; Konstantin Todorov; Patrice Duroux (ISWC, 2022)

IMGT® databases, related tools and web resources through three main axes of research and development. - Taciana Manso; Géraldine Folch; Véronique Giudicelli; Joumana Jabado-Michaloud; Anjana Kushwaha; Viviane Nguefack Ngoune; Maria Georga; Ariadni Papadaki; Chahrazed Debbagh; Perrine Pégorier; Morgane Bertignac; Saida Hadi-Saljoqi; et al. (Nucleic Acids Res., 2022)

IMGT/RobustpMHC: robust training for class-I MHC peptide binding prediction. - Anjana Kushwaha; Patrice Duroux; Véronique Giudicelli; Konstantin Todorov; Sofia Kossida (Briefings Bioinform., 2024)

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. - Karina Martinez; Jon Agirre; Yukie Akune; Kiyoko F. Aoki-Kinoshita; Cecilia N. Arighi; Kristian B. Axelsen; Evan Bolton; Emily Bordeleau; Nathan J. Edwards; Elisa Fadda; Ten Feizi; Catherine A. Hayes; et al. (Database J. Biol. Databases Curation, 2024)