PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion. - Sophia Tang; Yinuo Zhang; Pranam Chatterjee (CoRR, 2024)

Gumbel-Softmax Flow Matching with Straight-Through Guidance for Controllable Biological Sequence Generation. - Sophia Tang; Yinuo Zhang; Alexander Tong 001; Pranam Chatterjee (CoRR, 2025)

Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design. - Tong Chen; Yinuo Zhang; Sophia Tang; Pranam Chatterjee (CoRR, 2025)

Branched Schrödinger Bridge Matching. - Sophia Tang; Yinuo Zhang; Alexander Tong 001; Pranam Chatterjee (CoRR, 2025)