Ab initio determination of the flexibility of 2'-aminoribonucleosides and 2'-aminoarabinonucleosides inserted in duplexes. - Sophie Barbe; Marc Le Bret (J. Comput. Chem., 2008)

Encoding Molecular Motions in Voxel Maps. - Juan Cortés; Sophie Barbe; Monique Erard; Thierry Siméon (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Computational Protein Design as a Cost Function Network Optimization Problem. - David Allouche; Seydou Traoré; Isabelle André; Simon de Givry; George Katsirelos; Sophie Barbe; Thomas Schiex (CP, 2012)

A new framework for computational protein design through cost function network optimization. - Seydou Traoré; David Allouche; Isabelle André; Simon de Givry; George Katsirelos; Thomas Schiex; Sophie Barbe (Bioinform., 2013)

Computational protein design as an optimization problem. - David Allouche; Isabelle André; Sophie Barbe; Jessica Davies 001; Simon de Givry; George Katsirelos; Barry O'Sullivan; Steven D. Prestwich; Thomas Schiex; Seydou Traoré (Artif. Intell., 2014)

Approximate Counting with Deterministic Guarantees for Affinity Computation. - Clément Viricel; David Simoncini; David Allouche; Simon de Givry; Sophie Barbe; Thomas Schiex (MCO (2), 2015)

Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure. - Clément Viricel; David Simoncini; Sophie Barbe; Thomas Schiex (CP, 2016)

Fast search algorithms for computational protein design. - Seydou Traoré; Kyle E. Roberts; David Allouche; Bruce Randall Donald; Isabelle André; Thomas Schiex; Sophie Barbe (J. Comput. Chem., 2016)

Fitness landscape analysis around the optimum in computational protein design. - David Simoncini; Sophie Barbe; Thomas Schiex; Sébastien Vérel (GECCO, 2018)

Cost function network-based design of protein-protein interactions: predicting changes in binding affinity. - Clément Viricel; Simon de Givry; Thomas Schiex; Sophie Barbe (Bioinform., 2018)

Guaranteed Diversity & Quality for the Weighted CSP. - Manon Ruffini; Jelena Vucinic; Simon de Givry; George Katsirelos; Sophie Barbe; Thomas Schiex (ICTAI, 2019)

A structural homology approach for computational protein design with flexible backbone. - David Simoncini; Kam Y. J. Zhang; Thomas Schiex; Sophie Barbe (Bioinform., 2019)

Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems. - Antoine Charpentier; David Mignon; Sophie Barbe; Juan Cortés; Thomas Schiex; Thomas Simonson; David Allouche (J. Chem. Inf. Model., 2019)

Positive multistate protein design. - Jelena Vucinic; David Simoncini; Manon Ruffini; Sophie Barbe; Thomas Schiex (Bioinform., 2020)

Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods. - Manon Ruffini; Jelena Vucinic; Simon de Givry; George Katsirelos; Sophie Barbe; Thomas Schiex (Algorithms, 2021)

Scalable Coupling of Deep Learning with Logical Reasoning. - Marianne Defresne; Sophie Barbe; Thomas Schiex (IJCAI, 2023)