Exceptional Motifs in Different Markov Chain Models for a Statistical Analysis of DNA Sequences. - Sophie Schbath; Bernard Prum; Elisabeth de Turckheim (J. Comput. Biol., 1995)

Etude asymptotique du nombre d'occurrences d'un mot dans une chaîne de Markov et application à la recherche de mots de fréquence exceptionnelle dans les séquences d'ADN. - Sophie Schbath (1995)

Coverage Processes in Physical Mapping by Anchoring Random Clones. - Sophie Schbath (J. Comput. Biol., 1997)

An Efficient Statistic to Detect Over-and Under-Represented Words in DNA Sequences. - Sophie Schbath (J. Comput. Biol., 1997)

Compound Poisson and Poisson Process Approximations for Occurrences of Multiple Words in Markov Chains. - Gesine Reinert; Sophie Schbath (J. Comput. Biol., 1998)

Probabilistic and Statistical Properties of Words: An Overview. - Gesine Reinert; Sophie Schbath; Michael S. Waterman (J. Comput. Biol., 2000)

An Overview on the Distribution of Word Counts in Markov Chains. - Sophie Schbath (J. Comput. Biol., 2000)

The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project. - Sophie Schbath; Nathalie Bossard; Simon Tavaré (J. Comput. Biol., 2000)

Occurrence Probability of Structured Motifs in Random Sequences. - Stéphane Robin; Jean-Jacques Daudin; Hugues Richard; Marie-France Sagot; Sophie Schbath (J. Comput. Biol., 2002)

Numerical Comparison of Several Approximations of the Word Count Distribution in Random Sequences. - Stéphane Robin; Sophie Schbath (J. Comput. Biol., 2002)

Statistical tests to compare motif count exceptionalities. - Stéphane Robin; Sophie Schbath; Vincent Vandewalle (BMC Bioinform., 2007)

Waiting times for clumps of patterns and for structured motifs in random sequences. - Valery T. Stefanov; Stéphane Robin; Sophie Schbath (Discret. Appl. Math., 2007)

SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics. - Fabrice Touzain; Sophie Schbath; Isabelle Debled-Rennesson; Bertrand Aigle; Gregory Kucherov; Pierre Leblond (BMC Bioinform., 2008)

Assessing the Exceptionality of Network Motifs. - Franck Picard; Jean-Jacques Daudin; Michel Koskas; Sophie Schbath; Stéphane Robin (J. Comput. Biol., 2008)

Assessing the Exceptionality of Coloured Motifs in Networks. - Sophie Schbath; Vincent Lacroix; Marie-France Sagot (EURASIP J. Bioinform. Syst. Biol., 2009)

Using graph modularity analysis to identify transcription factor binding sites. - Alexandre P. Francisco; Sophie Schbath; Ana T. Freitas; Arlindo L. Oliveira (BIBM Workshops, 2010)

Assessing the Robustness of Complete Bacterial Genome Segmentations. - Hugo Devillers; Hélène Chiapello; Sophie Schbath; Meriem El Karoui (RECOMB-CG, 2010)

Occurrence of structured motifs in random sequences: Arbitrary number of boxes. - Valery T. Stefanov; Stéphane Robin; Sophie Schbath (Discret. Appl. Math., 2011)

Robustness Assessment of Whole Bacterial Genome Segmentations. - Hugo Devillers; Hélène Chiapello; Sophie Schbath; Meriem El Karoui (J. Comput. Biol., 2011)

Separating Significant Matches from Spurious Matches in DNA Sequences. - Hugo Devillers; Sophie Schbath (J. Comput. Biol., 2012)

Statistical Significance of Threading Scores. - Afshin Fayyaz Movaghar; Guillaume Launay; Sophie Schbath; Jean-François Gibrat; François Rodolphe (J. Comput. Biol., 2012)

Mapping Reads on a Genomic Sequence: An Algorithmic Overview and a Practical Comparative Analysis. - Sophie Schbath; Véronique Martin; Matthias Zytnicki; Julien Fayolle; Valentin Loux; Jean-François Gibrat (J. Comput. Biol., 2012)

Multiple comparative metagenomics using multiset k-mer counting. - Gaëtan Benoit; Pierre Peterlongo; Mahendra Mariadassou; Erwan Drezen; Sophie Schbath; Dominique Lavenier; Claire Lemaitre (PeerJ Comput. Sci., 2016)

SimkaMin: fast and resource frugal de novo comparative metagenomics. - Gaëtan Benoit; Mahendra Mariadassou; Stéphane Robin; Sophie Schbath; Pierre Peterlongo; Claire Lemaitre (Bioinform., 2020)

DUGMO: tool for the detection of unknown genetically modified organisms with high-throughput sequencing data for pure bacterial samples. - Julie Hurel; Sophie Schbath; Stéphanie Bougeard; Mathieu Rolland; Mauro Petrillo; Fabrice Touzain (BMC Bioinform., 2020)