Micro, Meso, Macro: the effect of triangles on communities in networks. - Sophie Wharrie; Lamiae Azizi; Eduardo G. Altmann (CoRR, 2019)

Characterizing personalized effects of family information on disease risk using graph representation learning. - Sophie Wharrie; Zhiyu Yang; Andrea Ganna; Samuel Kaski (MLHC, 2023)

Causal Similarity-Based Hierarchical Bayesian Models. - Sophie Wharrie; Samuel Kaski (CoRR, 2023)

HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes. - Sophie Wharrie; Zhiyu Yang; Vishnu Raj; Remo Monti; Rahul Gupta; Ying Wang 074; Alicia Martin; Luke J. O'Connor; Samuel Kaski; Pekka Marttinen; Pier Francesco Palamara; Christoph Lippert; et al. (Bioinform., 2023)