Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactions. - Kamal Gajendran; Michael D. Gonzales; Andrew D. Farmer; Eric Archuleta; Joe Win; Mark E. Waugh; Sophien Kamoun (Nucleic Acids Res., 2006)

Incorporating prior knowledge improves detection of differences in bacterial growth rate. - Lydia M. Rickett; Nick Pullen; Matthew Hartley; Cyril Zipfel; Sophien Kamoun; József Baranyi; Richard J. Morris (BMC Syst. Biol., 2015)

nQuire: a statistical framework for ploidy estimation using next generation sequencing. - Clemens L. Weiß; Marina Pais; Liliana M. Cano; Sophien Kamoun; Hernán A. Burbano (BMC Bioinform., 2018)