RBT - a tool for building refined Buneman trees. - Søren Besenbacher; Thomas Mailund; Lasse Westh-Nielsen; Christian N. S. Pedersen (Bioinform., 2005)

Whole genome association mapping by incompatibilities and local perfect phylogenies. - Thomas Mailund; Søren Besenbacher; Mikkel H. Schierup (BMC Bioinform., 2006)

A fast algorithm for genome-wide haplotype pattern mining. - Søren Besenbacher; Christian N. S. Pedersen; Thomas Mailund (BMC Bioinform., 2009)

Indexing and Searching a Mass Spectrometry Database. - Søren Besenbacher; Benno Schwikowski; Jens Stoye (Algorithms and Applications, 2010)

Identifying disease associated genes by network propagation. - Yu Qian; Søren Besenbacher; Thomas Mailund; Mikkel Heide Schierup (BMC Syst. Biol., 2014)

Modeling non-equilibrium population using variable-chromosome-length genetic algorithm. - Muhammad Marwan Muhammad Fuad; Søren Besenbacher (CEC, 2017)

Prediction of Primary Tumors in Cancers of Unknown Primary. - Dan Søndergaard; Svend V. Nielsen; Christian N. S. Pedersen; Søren Besenbacher (J. Integr. Bioinform., 2017)

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. - Lasse Maretty; Jacob Malte Jensen; Bent Petersen; Jonas Andreas Sibbesen; Siyang Liu 007; Palle Villesen; Laurits Skov; Kirstine Belling; Christian Theil Have; José M. G. Izarzugaza; Marie Grosjean; Jette Bork-Jensen; et al. (Nat., 2017)

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data. - Johanna Bertl; Qianyun Guo; Malene Juul; Søren Besenbacher; Morten Muhlig Nielsen; Henrik Hornshøj; Jakob Skou Pedersen; Asger Hobolth (BMC Bioinform., 2018)

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. - Maria Luisa Matey-Hernandez; Lasse Maretty; Jacob Malte Jensen; Bent Petersen; Jonas Andreas Sibbesen; Siyang Liu 007; Palle Villesen; Laurits Skov; Kirstine Belling; Christian Theil Have; José M. G. Izarzugaza; Marie Grosjean; et al. (BMC Bioinform., 2018)